Fast download of Count Matrix?

uc-bd2k / GREIN

GREIN : GEO RNA-seq Experiments Interactive Navigator

https://shiny.ilincs.org/grein

GNU General Public License v2.0

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Fast download of Count Matrix? #27

Closed CHR991004 closed 5 months ago

CHR991004 commented 7 months ago

Thank you for creating this very powerful database. You have made outstanding contributions to GEO data mining. I would like to ask if there is a faster way to download the count matrix, as this is not conducive for website usage by web crawlers. Please contact me if there are any further developments. Thank you once again.

CHR991004 commented 7 months ago

If permitted, I am willing to participate in the construction.

Mario-Medvedovic commented 5 months ago

Thank you for offering help. We are planning on providing API services at some point, but not in the immediate future. Please note that there is a third-party python package developed that automates the process, and it may work for you (just Google grein python package). We are not supporting the package in any way, but seems to be working right now.