uc-bd2k / GREIN

GREIN : GEO RNA-seq Experiments Interactive Navigator
https://shiny.ilincs.org/grein
GNU General Public License v2.0
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GSE2666 example in container, Create Signature, not working #6

Closed maunei closed 4 years ago

maunei commented 5 years ago

Hi, I installed GREIN using docker, the interface shows as advertised, however when I wanted to run the analysis of the example dataset GSE2666, using Analyze -> Create Signature -> Variable of Interest: Cell Line, Type of Comparison: Two group without covariate, Experimental Group: H9, Control Group: HeLa and Click Generate Signature, looks like is computing, but then shows no output, when I download the signature, it is also empty.

I think your work is great, and I would like to use it locally (by the way when I go to the public server, the data set GSE2666 has not been analyzed yet ... I thought it should be there as you chose it as the example in the container)

I appreciate it if you can help, it may be something simple (I hope). I can ssh into the container, but don't know which log files could help to understand the issue.