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uc-bd2k / ilincsAPI

MIT License
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SignatureMeta/upload not working #1

Closed maunei closed 2 years ago

maunei commented 5 years ago

Hi, I am following your tutorial on how to use ilincsAPI. This uploading is not working, and I think it is something from your side:

Upload the file # NOT WORKING!

apiUrl<-"http://www.ilincs.org/api/SignatureMeta/upload" sigFile <- "sigFile.tsv" req <- POST(apiUrl, body=list(file=upload_file("sigFile.tsv"))) # sigFile.tsv came from signatureData signatureFile <- httr::content(req)$status$fileName[[1]] signatureFile NULL

Showing, the file for uploading is OK

file.exists("sigFile.tsv")

[1] TRUE

system(paste("head -3 sigFile.tsv"))

signatureID PROBE ID_geneid Name_GeneSymbol Value_LogDiffExp Significance_pvalue

LINCSCP_100 NA 16 AARS 1.047 0.200843393802643

LINCSCP_100 NA 23 ABCF1 0.787095 0.0835145935416222

Mario-Medvedovic commented 5 years ago

It was definitely a problem on our side. Thank you for pointing this out to us. The example now works. Please note that the problem has actually been limited to uploading the file with this specific name "sigFile.tsv" and the code would have worked with more or less any other arbitrary file name. I will keep this issue open to test our fix for a bit longer. Thanks again for the feedback. Mario