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uc-cdis / peregrine

GraphQL search API service
Apache License 2.0
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feat(projects): add projects endpoint #123

Closed philloooo closed 5 years ago

philloooo commented 5 years ago

Description about what this pull request does.

Please make sure to follow the DEV guidelines before asking for review.

New Features

Breaking Changes

Bug Fixes

Improvements

Dependency updates

Deployment changes

PlanXCyborg commented 5 years ago

Jenkins Build 2 : time taken 42 min Check the https://jenkins.planx-pla.net/job/perf-peregrine/job/PR-123/2/display/redirect

Test results: Passed: 109, Failed: 0, Skipped: 0

Test Time (PR) Time (master) Diff
@ExportPerformanceTests @Performance: Export all nodes of type: case 0.443 0.264 0.18
@ExportPerformanceTests @Performance: Export all nodes of type: experiment 0.381 0.334 0.05
@ExportPerformanceTests @Performance: Export all nodes of type: program 0.068 0.052 0.02
@ExportPerformanceTests @Performance: Export all nodes of type: project 0.069 0.047 0.02
@ExportPerformanceTests @Performance: Export all nodes of type: read_group_qc 0.108 0.092 0.02
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: aliquot 0.229 0.154 0.08
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: case 0.314 0.288 0.03
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group 0.092 0.077 0.02
@QueryPerformanceTests @Performance: Executing bottomUp query # 0 0.691 0.655 0.04
@QueryPerformanceTests @Performance: Executing bottomUp query # 2 0.55 0.523 0.03
@QueryPerformanceTests @Performance: Executing topDown query # 1 0.086 0.076 0.01
@QueryPerformanceTests @Performance: Executing topDown query # 4 0.316 0.271 0.05
@QueryPerformanceTests @Performance: Executing topDown query # 5 0.394 0.353 0.04
@SubmissionPerformanceTests @Performance: Submission aliquot 1000 28.237 22.073 6.16
@SubmissionPerformanceTests @Performance: Submission clinical_test 100 2.568 2.4 0.17
@SubmissionPerformanceTests @Performance: Submission diagnosis 100 3.185 2.353 0.83
@SubmissionPerformanceTests @Performance: Submission family_history 100 2.697 2.106 0.59
@SubmissionPerformanceTests @Performance: Submission publication 100 2.564 2.428 0.14
@SubmissionPerformanceTests @Performance: Submission read_group_qc 10 0.719 0.626 0.09
@SubmissionPerformanceTests @Performance: Submission sample 100 45.053 2.738 42.32
@SubmissionPerformanceTests @Performance: Submission slide 100 33.849 2.358 31.49
@SubmissionPerformanceTests @Performance: Submission slide_count 10 0.46 0.428 0.03
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 10 21.944 3.076 18.87
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 10 2.179 2.017 0.16
@SubmissionPerformanceTests @Performance: Submission treatment 10 0.41 0.31 0.10
PlanXCyborg commented 5 years ago

Jenkins Build 4 : time taken 37 min Check the https://jenkins.planx-pla.net/job/perf-peregrine/job/PR-123/4/display/redirect

Test results: Passed: 109, Failed: 0, Skipped: 0

Test Time (PR) Time (master) Diff
@ExportPerformanceTests @Performance: Export all nodes of type: aliquot 0.403 0.373 0.03
@ExportPerformanceTests @Performance: Export all nodes of type: case 0.397 0.255 0.14
@ExportPerformanceTests @Performance: Export all nodes of type: experiment 0.791 0.41 0.38
@ExportPerformanceTests @Performance: Export all nodes of type: program 0.181 0.053 0.13
@ExportPerformanceTests @Performance: Export all nodes of type: project 0.125 0.102 0.02
@ExportPerformanceTests @Performance: Export all nodes of type: read_group 0.778 0.536 0.24
@ExportPerformanceTests @Performance: Export all nodes of type: read_group_qc 0.172 0.113 0.06
@ExportPerformanceTests @Performance: Export all nodes of type: sample 0.584 0.531 0.05
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: aliquot 0.28 0.175 0.11
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: case 0.323 0.223 0.10
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: experiment 0.289 0.203 0.09
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group 0.169 0.07 0.10
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group_qc 0.078 0.063 0.02
@QueryPerformanceTests @Performance: Executing bottomUp query # 0 0.72 0.685 0.04
@QueryPerformanceTests @Performance: Executing bottomUp query # 4 0.364 0.343 0.02
@QueryPerformanceTests @Performance: Executing bottomUp query # 6 0.179 0.157 0.02
@QueryPerformanceTests @Performance: Executing bottomUp query # 7 0.087 0.077 0.01
@QueryPerformanceTests @Performance: Executing topDown query # 0 0.106 0.074 0.03
@QueryPerformanceTests @Performance: Executing topDown query # 1 0.083 0.077 0.01
@QueryPerformanceTests @Performance: Executing topDown query # 2 0.105 0.095 0.01
@QueryPerformanceTests @Performance: Executing topDown query # 4 0.373 0.249 0.12
@QueryPerformanceTests @Performance: Executing topDown query # 5 0.401 0.332 0.07
@QueryPerformanceTests @Performance: Executing topDown query # 6 0.528 0.439 0.09
@QueryPerformanceTests @Performance: Executing topDown query # 7 0.562 0.514 0.05
@SubmissionPerformanceTests @Performance: Submission acknowledgement 10 0.502 0.332 0.17
@SubmissionPerformanceTests @Performance: Submission acknowledgement 1000 26.049 22.248 3.80
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 10 2.256 1.999 0.26
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 100 21.586 15.838 5.75
@SubmissionPerformanceTests @Performance: Submission aliquot 100 2.73 2.257 0.47
@SubmissionPerformanceTests @Performance: Submission clinical_test 100 2.846 2.543 0.30
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 10 1.097 0.887 0.21
@SubmissionPerformanceTests @Performance: Submission diagnosis 10 0.496 0.381 0.11
@SubmissionPerformanceTests @Performance: Submission diagnosis 100 3.177 2.683 0.49
@SubmissionPerformanceTests @Performance: Submission experimental_metadata 10 2.336 1.661 0.67
@SubmissionPerformanceTests @Performance: Submission experimental_metadata 100 20.196 15.793 4.40
@SubmissionPerformanceTests @Performance: Submission exposure 10 0.347 0.328 0.02
@SubmissionPerformanceTests @Performance: Submission exposure 1000 27.728 23.998 3.73
@SubmissionPerformanceTests @Performance: Submission family_history 10 0.618 0.323 0.29
@SubmissionPerformanceTests @Performance: Submission family_history 100 2.671 2.335 0.34
@SubmissionPerformanceTests @Performance: Submission keyword 10 0.455 0.37 0.09
@SubmissionPerformanceTests @Performance: Submission keyword 100 2.553 2.205 0.35
@SubmissionPerformanceTests @Performance: Submission publication 100 3.227 2.237 0.99
@SubmissionPerformanceTests @Performance: Submission read_group_qc 10 0.676 0.49 0.19
@SubmissionPerformanceTests @Performance: Submission slide 100 2.73 2.533 0.20
@SubmissionPerformanceTests @Performance: Submission slide_image 10 2.169 1.716 0.45
@SubmissionPerformanceTests @Performance: Submission slide_image 100 20.495 15.556 4.94
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 10 2.09 1.654 0.44
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 100 23.699 15.881 7.82
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 10 2.282 1.635 0.65
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 100 19.133 16.57 2.56
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 100 22.475 15.884 6.59
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 10 2.246 1.645 0.60
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 100 23.275 15.795 7.48
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 10 2.046 1.717 0.33
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 100 19.348 15.845 3.50