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uc-cdis / peregrine

GraphQL search API service
Apache License 2.0
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chore(uwsgi-logs) #133

Closed paulineribeyre closed 5 years ago

paulineribeyre commented 5 years ago

Improvements

PlanXCyborg commented 5 years ago

Jenkins Build 1 : time taken 38 min Check the https://jenkins.planx-pla.net/job/Performance%20tests%20for%20uc-cdis/job/peregrine/job/PR-133/1/display/redirect

Test results: Passed: 109, Failed: 0, Skipped: 0

Test Time (PR) Time (master) Diff
@ExportPerformanceTests @Performance: Export all nodes of type: aliquot 0.085 0.242 -0.16
@ExportPerformanceTests @Performance: Export all nodes of type: case 0.086 0.341 -0.25
@ExportPerformanceTests @Performance: Export all nodes of type: experiment 0.082 0.248 -0.17
@ExportPerformanceTests @Performance: Export all nodes of type: program 0.049 0.058 -0.01
@ExportPerformanceTests @Performance: Export all nodes of type: project 0.044 0.047 -0.00
@ExportPerformanceTests @Performance: Export all nodes of type: read_group 0.093 0.447 -0.35
@ExportPerformanceTests @Performance: Export all nodes of type: read_group_qc 0.124 0.137 -0.01
@ExportPerformanceTests @Performance: Export all nodes of type: sample 0.093 0.354 -0.26
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: aliquot 0.391 0.127 0.26
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: case 0.313 0.185 0.13
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: experiment 0.213 0.187 0.03
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group 0.095 0.126 -0.03
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group_qc 0.069 0.055 0.01
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: sample 0.167 0.08 0.09
@QueryPerformanceTests @Performance: Executing bottomUp query # 0 0.765 0.705 0.06
@QueryPerformanceTests @Performance: Executing bottomUp query # 1 0.568 0.676 -0.11
@QueryPerformanceTests @Performance: Executing bottomUp query # 2 0.588 0.649 -0.06
@QueryPerformanceTests @Performance: Executing bottomUp query # 3 0.45 0.5 -0.05
@QueryPerformanceTests @Performance: Executing bottomUp query # 6 0.176 0.196 -0.02
@QueryPerformanceTests @Performance: Executing bottomUp query # 7 0.061 0.08 -0.02
@QueryPerformanceTests @Performance: Executing topDown query # 0 0.043 0.049 -0.01
@QueryPerformanceTests @Performance: Executing topDown query # 2 0.087 0.104 -0.02
@QueryPerformanceTests @Performance: Executing topDown query # 4 0.266 0.331 -0.06
@QueryPerformanceTests @Performance: Executing topDown query # 5 0.368 0.414 -0.05
@QueryPerformanceTests @Performance: Executing topDown query # 6 0.515 0.587 -0.07
@QueryPerformanceTests @Performance: Executing topDown query # 7 0.591 0.68 -0.09
@SubmissionPerformanceTests @Performance: Submission acknowledgement 10 0.296 0.235 0.06
@SubmissionPerformanceTests @Performance: Submission acknowledgement 100 2.097 1.461 0.64
@SubmissionPerformanceTests @Performance: Submission acknowledgement 1000 19.877 14.177 5.70
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 10 1.814 1.491 0.32
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 100 16.514 14.44 2.07
@SubmissionPerformanceTests @Performance: Submission aliquot 10 0.324 0.398 -0.07
@SubmissionPerformanceTests @Performance: Submission aliquot 100 2.371 1.648 0.72
@SubmissionPerformanceTests @Performance: Submission aliquot 1000 13.318 17.534 -4.22
@SubmissionPerformanceTests @Performance: Submission case 10 0.347 0.235 0.11
@SubmissionPerformanceTests @Performance: Submission case 100 2.171 1.571 0.60
@SubmissionPerformanceTests @Performance: Submission case 1000 59.377 15.342 44.03
@SubmissionPerformanceTests @Performance: Submission clinical_test 10 0.38 0.287 0.09
@SubmissionPerformanceTests @Performance: Submission clinical_test 100 2.284 1.721 0.56
@SubmissionPerformanceTests @Performance: Submission clinical_test 1000 14.105 17.968 -3.86
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 10 1.008 0.514 0.49
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 100 2.512 1.816 0.70
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 1000 45.176 15.982 29.19
@SubmissionPerformanceTests @Performance: Submission demographic 10 0.353 0.249 0.10
@SubmissionPerformanceTests @Performance: Submission demographic 100 2.36 1.773 0.59
@SubmissionPerformanceTests @Performance: Submission demographic 1000 13.105 16.474 -3.37
@SubmissionPerformanceTests @Performance: Submission diagnosis 10 0.455 0.262 0.19
@SubmissionPerformanceTests @Performance: Submission diagnosis 100 2.591 1.947 0.64
@SubmissionPerformanceTests @Performance: Submission diagnosis 1000 17.008 18.675 -1.67
@SubmissionPerformanceTests @Performance: Submission experiment 10 0.369 0.306 0.06
@SubmissionPerformanceTests @Performance: Submission experiment 100 2.094 1.64 0.45
@SubmissionPerformanceTests @Performance: Submission experiment 1000 45.245 14.598 30.65
@SubmissionPerformanceTests @Performance: Submission experimental_metadata 10 1.607 1.467 0.14
@SubmissionPerformanceTests @Performance: Submission experimental_metadata 100 16.211 14.073 2.14
@SubmissionPerformanceTests @Performance: Submission exposure 10 0.412 0.257 0.16
@SubmissionPerformanceTests @Performance: Submission exposure 100 2.218 1.624 0.59
@SubmissionPerformanceTests @Performance: Submission exposure 1000 14.858 15.732 -0.87
@SubmissionPerformanceTests @Performance: Submission family_history 10 0.302 0.248 0.05
@SubmissionPerformanceTests @Performance: Submission family_history 100 2.027 1.764 0.26
@SubmissionPerformanceTests @Performance: Submission family_history 1000 14.205 15.536 -1.33
@SubmissionPerformanceTests @Performance: Submission keyword 10 0.298 0.231 0.07
@SubmissionPerformanceTests @Performance: Submission keyword 100 1.93 1.42 0.51
@SubmissionPerformanceTests @Performance: Submission keyword 1000 32.504 14.575 17.93
@SubmissionPerformanceTests @Performance: Submission publication 10 0.316 0.248 0.07
@SubmissionPerformanceTests @Performance: Submission publication 100 2.062 1.56 0.50
@SubmissionPerformanceTests @Performance: Submission publication 1000 20.628 14.952 5.68
@SubmissionPerformanceTests @Performance: Submission read_group 10 0.331 0.286 0.04
@SubmissionPerformanceTests @Performance: Submission read_group 100 2.64 1.733 0.91
@SubmissionPerformanceTests @Performance: Submission read_group 1000 15.553 18.138 -2.59
@SubmissionPerformanceTests @Performance: Submission read_group_qc 10 0.554 0.357 0.20
@SubmissionPerformanceTests @Performance: Submission read_group_qc 100 3.816 2.843 0.97
@SubmissionPerformanceTests @Performance: Submission read_group_qc 1000 16.412 19.982 -3.57
@SubmissionPerformanceTests @Performance: Submission sample 10 0.449 0.253 0.20
@SubmissionPerformanceTests @Performance: Submission sample 100 2.724 1.885 0.84
@SubmissionPerformanceTests @Performance: Submission sample 1000 14.31 17.382 -3.07
@SubmissionPerformanceTests @Performance: Submission slide 10 0.377 0.256 0.12
@SubmissionPerformanceTests @Performance: Submission slide 100 2.303 1.809 0.49
@SubmissionPerformanceTests @Performance: Submission slide 1000 15.317 16.714 -1.40
@SubmissionPerformanceTests @Performance: Submission slide_count 10 0.322 0.236 0.09
@SubmissionPerformanceTests @Performance: Submission slide_count 100 2.048 1.691 0.36
@SubmissionPerformanceTests @Performance: Submission slide_count 1000 13.08 15.219 -2.14
@SubmissionPerformanceTests @Performance: Submission slide_image 10 1.752 1.503 0.25
@SubmissionPerformanceTests @Performance: Submission slide_image 100 16.941 13.755 3.19
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 10 1.759 1.46 0.30
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 100 16.388 15.152 1.24
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 100 15.982 14.015 1.97
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 10 1.68 1.572 0.11
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 100 16.119 14.79 1.33
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 10 1.796 1.603 0.19
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 100 17.268 13.674 3.59
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 10 1.748 1.508 0.24
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 100 16.117 14.369 1.75
@SubmissionPerformanceTests @Performance: Submission treatment 10 0.313 0.264 0.05
@SubmissionPerformanceTests @Performance: Submission treatment 100 2.357 1.53 0.83
PlanXCyborg commented 5 years ago

Jenkins Build 2 : time taken 40 min Check the https://jenkins.planx-pla.net/job/Performance%20tests%20for%20uc-cdis/job/peregrine/job/PR-133/2/display/redirect

Test results: Passed: 108, Failed: 1, Skipped: 0

Test Time (PR) Time (master) Diff
@ExportPerformanceTests @Performance: Export all nodes of type: aliquot 0.301 0.242 0.06
@ExportPerformanceTests @Performance: Export all nodes of type: experiment 0.339 0.248 0.09
@ExportPerformanceTests @Performance: Export all nodes of type: program 0.055 0.058 -0.00
@ExportPerformanceTests @Performance: Export all nodes of type: project 0.051 0.047 0.00
@ExportPerformanceTests @Performance: Export all nodes of type: read_group_qc 0.111 0.137 -0.03
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: aliquot 0.216 0.127 0.09
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: case 0.206 0.185 0.02
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group 0.066 0.126 -0.06
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group_qc 0.052 0.055 -0.00
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: sample 0.18 0.08 0.10
@QueryPerformanceTests @Performance: Executing bottomUp query # 1 0.553 0.676 -0.12
@QueryPerformanceTests @Performance: Executing bottomUp query # 2 0.576 0.649 -0.07
@QueryPerformanceTests @Performance: Executing bottomUp query # 7 0.164 0.08 0.08
@QueryPerformanceTests @Performance: Executing topDown query # 1 0.099 0.078 0.02
@QueryPerformanceTests @Performance: Executing topDown query # 4 0.275 0.331 -0.06
@QueryPerformanceTests @Performance: Executing topDown query # 5 0.348 0.414 -0.07
@QueryPerformanceTests @Performance: Executing topDown query # 6 0.453 0.587 -0.13
@QueryPerformanceTests @Performance: Executing topDown query # 7 0.547 0.68 -0.13
@SubmissionPerformanceTests @Performance: Submission acknowledgement 10 0.29 0.235 0.05
@SubmissionPerformanceTests @Performance: Submission acknowledgement 100 1.634 1.461 0.17
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 10 1.803 1.491 0.31
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 100 16.994 14.44 2.55
@SubmissionPerformanceTests @Performance: Submission aliquot 10 0.255 0.398 -0.14
@SubmissionPerformanceTests @Performance: Submission case 10 0.26 0.235 0.02
@SubmissionPerformanceTests @Performance: Submission case 100 1.697 1.571 0.13
@SubmissionPerformanceTests @Performance: Submission case 1000 16.501 15.342 1.16
@SubmissionPerformanceTests @Performance: Submission clinical_test 100 2.075 1.721 0.35
@SubmissionPerformanceTests @Performance: Submission clinical_test 1000 19.884 17.968 1.92
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 10 2.006 0.514 1.49
@SubmissionPerformanceTests @Performance: Submission demographic 10 0.27 0.249 0.02
@SubmissionPerformanceTests @Performance: Submission demographic 100 2.254 1.773 0.48
@SubmissionPerformanceTests @Performance: Submission demographic 1000 19.992 16.474 3.52
@SubmissionPerformanceTests @Performance: Submission diagnosis 10 0.302 0.262 0.04
@SubmissionPerformanceTests @Performance: Submission diagnosis 100 2.495 1.947 0.55
@SubmissionPerformanceTests @Performance: Submission diagnosis 1000 56.882 18.675 38.21
@SubmissionPerformanceTests @Performance: Submission experiment 10 0.642 0.306 0.34
@SubmissionPerformanceTests @Performance: Submission experiment 100 1.934 1.64 0.29
@SubmissionPerformanceTests @Performance: Submission experiment 1000 16.115 14.598 1.52
@SubmissionPerformanceTests @Performance: Submission experimental_metadata 10 1.937 1.467 0.47
@SubmissionPerformanceTests @Performance: Submission experimental_metadata 100 16.882 14.073 2.81
@SubmissionPerformanceTests @Performance: Submission exposure 10 0.303 0.257 0.05
@SubmissionPerformanceTests @Performance: Submission exposure 100 1.747 1.624 0.12
@SubmissionPerformanceTests @Performance: Submission family_history 10 0.349 15.732 -15.38
@SubmissionPerformanceTests @Performance: Submission family_history 100 1.648 0.248 1.40
@SubmissionPerformanceTests @Performance: Submission family_history 1000 17.026 1.764 15.26
@SubmissionPerformanceTests @Performance: Submission keyword 10 0.253 15.536 -15.28
@SubmissionPerformanceTests @Performance: Submission keyword 100 1.514 0.231 1.28
@SubmissionPerformanceTests @Performance: Submission keyword 1000 15.481 1.42 14.06
@SubmissionPerformanceTests @Performance: Submission publication 10 0.311 14.575 -14.26
@SubmissionPerformanceTests @Performance: Submission publication 100 1.542 0.248 1.29
@SubmissionPerformanceTests @Performance: Submission publication 1000 15.65 1.56 14.09
@SubmissionPerformanceTests @Performance: Submission read_group 10 0.293 14.952 -14.66
@SubmissionPerformanceTests @Performance: Submission read_group 100 2.086 0.286 1.80
@SubmissionPerformanceTests @Performance: Submission read_group 1000 22.332 1.733 20.60
@SubmissionPerformanceTests @Performance: Submission read_group_qc 10 0.411 18.138 -17.73
@SubmissionPerformanceTests @Performance: Submission read_group_qc 100 3.027 0.357 2.67
@SubmissionPerformanceTests @Performance: Submission read_group_qc 1000 45.072 2.843 42.23
@SubmissionPerformanceTests @Performance: Submission sample 10 0.413 19.982 -19.57
@SubmissionPerformanceTests @Performance: Submission sample 100 2.035 0.253 1.78
@SubmissionPerformanceTests @Performance: Submission sample 1000 18.692 1.885 16.81
@SubmissionPerformanceTests @Performance: Submission slide 10 0.287 17.382 -17.09
@SubmissionPerformanceTests @Performance: Submission slide 100 2.188 0.256 1.93
@SubmissionPerformanceTests @Performance: Submission slide 1000 18.068 1.809 16.26
@SubmissionPerformanceTests @Performance: Submission slide_count 10 0.253 16.714 -16.46
@SubmissionPerformanceTests @Performance: Submission slide_count 100 1.813 0.236 1.58
@SubmissionPerformanceTests @Performance: Submission slide_count 1000 16.43 1.691 14.74
@SubmissionPerformanceTests @Performance: Submission slide_image 10 1.776 15.219 -13.44
@SubmissionPerformanceTests @Performance: Submission slide_image 100 16.958 1.503 15.46
@SubmissionPerformanceTests @Performance: Submission slide_image 1000 45.178 13.755 31.42
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 10 1.91 45.085 -43.17
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 100 16.936 1.46 15.48
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 1000 44.614 15.152 29.46
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 10 1.871 45.124 -43.25
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 100 16.419 1.627 14.79
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 1000 44.887 14.015 30.87
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 10 1.78 45.243 -43.46
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 100 17.656 1.572 16.08
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 1000 44.432 14.79 29.64
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 10 1.856 45.138 -43.28
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 100 16.012 1.603 14.41
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 1000 46.335 13.674 32.66
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 10 1.994 44.828 -42.83
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 100 16.576 1.508 15.07
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 1000 59.501 14.369 45.13
@SubmissionPerformanceTests @Performance: Submission treatment 10 0.309 44.933 -44.62
@SubmissionPerformanceTests @Performance: Submission treatment 100 1.877 0.264 1.61
@SubmissionPerformanceTests @Performance: Submission treatment 1000 14.317 1.53 12.79