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uc-cdis / peregrine

GraphQL search API service
Apache License 2.0
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chore(docker): use pybase-1.0.2 #134

Closed giangbui closed 5 years ago

giangbui commented 5 years ago

Description about what this pull request does.

Please make sure to follow the DEV guidelines before asking for review.

New Features

Breaking Changes

Bug Fixes

Improvements

Dependency updates

Deployment changes

PlanXCyborg commented 5 years ago

Jenkins Build 1 : time taken 1 hr 16 min Check the https://jenkins.planx-pla.net/job/Performance%20tests%20for%20uc-cdis/job/peregrine/job/PR-134/1/display/redirect

Test results: Passed: 109, Failed: 0, Skipped: 0

Test Time (PR) Time (master) Diff
@ExportPerformanceTests @Performance: Export all nodes of type: aliquot 0.279 0.395 -0.12
@ExportPerformanceTests @Performance: Export all nodes of type: case 0.268 0.204 0.06
@ExportPerformanceTests @Performance: Export all nodes of type: program 0.064 0.045 0.02
@ExportPerformanceTests @Performance: Export all nodes of type: project 0.05 0.042 0.01
@ExportPerformanceTests @Performance: Export all nodes of type: read_group 0.829 0.401 0.43
@ExportPerformanceTests @Performance: Export all nodes of type: read_group_qc 0.103 0.167 -0.06
@ExportPerformanceTests @Performance: Export all nodes of type: sample 0.439 0.371 0.07
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: aliquot 0.218 0.163 0.05
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: case 0.333 0.199 0.13
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: experiment 0.237 0.199 0.04
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group 0.082 0.06 0.02
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group_qc 0.069 0.056 0.01
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: sample 0.112 0.094 0.02
@QueryPerformanceTests @Performance: Executing bottomUp query # 0 0.56 0.59 -0.03
@QueryPerformanceTests @Performance: Executing bottomUp query # 1 0.526 0.581 -0.05
@QueryPerformanceTests @Performance: Executing bottomUp query # 2 0.546 0.598 -0.05
@QueryPerformanceTests @Performance: Executing bottomUp query # 3 0.412 0.44 -0.03
@QueryPerformanceTests @Performance: Executing bottomUp query # 5 0.26 0.548 -0.29
@QueryPerformanceTests @Performance: Executing bottomUp query # 6 0.148 0.161 -0.01
@QueryPerformanceTests @Performance: Executing bottomUp query # 7 0.059 0.074 -0.02
@QueryPerformanceTests @Performance: Executing topDown query # 0 0.072 0.047 0.02
@QueryPerformanceTests @Performance: Executing topDown query # 3 0.174 0.203 -0.03
@QueryPerformanceTests @Performance: Executing topDown query # 5 0.381 0.45 -0.07
@QueryPerformanceTests @Performance: Executing topDown query # 7 0.535 0.605 -0.07
@SubmissionPerformanceTests @Performance: Submission acknowledgement 10 0.4 0.287 0.11
@SubmissionPerformanceTests @Performance: Submission acknowledgement 100 2.66 1.86 0.80
@SubmissionPerformanceTests @Performance: Submission acknowledgement 1000 24.705 17.415 7.29
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 10 2.342 1.753 0.59
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 100 20.7 17.536 3.16
@SubmissionPerformanceTests @Performance: Submission aliquot 10 0.41 0.327 0.08
@SubmissionPerformanceTests @Performance: Submission aliquot 100 2.829 1.89 0.94
@SubmissionPerformanceTests @Performance: Submission aliquot 1000 28.418 19.282 9.14
@SubmissionPerformanceTests @Performance: Submission case 10 0.468 0.281 0.19
@SubmissionPerformanceTests @Performance: Submission case 100 2.731 2.02 0.71
@SubmissionPerformanceTests @Performance: Submission case 1000 25.019 19.808 5.21
@SubmissionPerformanceTests @Performance: Submission clinical_test 10 0.359 0.404 -0.05
@SubmissionPerformanceTests @Performance: Submission clinical_test 100 2.927 2.283 0.64
@SubmissionPerformanceTests @Performance: Submission clinical_test 1000 31.337 20.976 10.36
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 10 1.399 0.945 0.45
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 100 2.963 2.192 0.77
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 1000 26.354 19.897 6.46
@SubmissionPerformanceTests @Performance: Submission demographic 10 0.468 0.318 0.15
@SubmissionPerformanceTests @Performance: Submission demographic 100 2.897 2.245 0.65
@SubmissionPerformanceTests @Performance: Submission demographic 1000 30.518 20.36 10.16
@SubmissionPerformanceTests @Performance: Submission diagnosis 10 0.467 0.367 0.10
@SubmissionPerformanceTests @Performance: Submission diagnosis 100 3.072 2.329 0.74
@SubmissionPerformanceTests @Performance: Submission diagnosis 1000 30.8 22.393 8.41
@SubmissionPerformanceTests @Performance: Submission experiment 10 0.441 0.379 0.06
@SubmissionPerformanceTests @Performance: Submission experiment 100 2.524 1.961 0.56
@SubmissionPerformanceTests @Performance: Submission experiment 1000 24.24 18.826 5.41
@SubmissionPerformanceTests @Performance: Submission experimental_metadata 10 2.079 1.79 0.29
@SubmissionPerformanceTests @Performance: Submission experimental_metadata 100 20.386 17.527 2.86
@SubmissionPerformanceTests @Performance: Submission exposure 10 0.397 0.323 0.07
@SubmissionPerformanceTests @Performance: Submission exposure 100 2.983 2.129 0.85
@SubmissionPerformanceTests @Performance: Submission exposure 1000 26.865 19.18 7.68
@SubmissionPerformanceTests @Performance: Submission family_history 10 0.381 0.3 0.08
@SubmissionPerformanceTests @Performance: Submission family_history 100 2.703 1.934 0.77
@SubmissionPerformanceTests @Performance: Submission family_history 1000 27.555 18.25 9.31
@SubmissionPerformanceTests @Performance: Submission keyword 10 0.334 0.287 0.05
@SubmissionPerformanceTests @Performance: Submission keyword 100 2.564 1.769 0.79
@SubmissionPerformanceTests @Performance: Submission keyword 1000 28.921 17.423 11.50
@SubmissionPerformanceTests @Performance: Submission publication 10 0.329 0.306 0.02
@SubmissionPerformanceTests @Performance: Submission publication 100 2.348 1.979 0.37
@SubmissionPerformanceTests @Performance: Submission publication 1000 27.469 17.808 9.66
@SubmissionPerformanceTests @Performance: Submission read_group 10 0.393 0.338 0.06
@SubmissionPerformanceTests @Performance: Submission read_group 100 3.613 2.048 1.56
@SubmissionPerformanceTests @Performance: Submission read_group 1000 30.006 21.994 8.01
@SubmissionPerformanceTests @Performance: Submission read_group_qc 10 0.838 0.454 0.38
@SubmissionPerformanceTests @Performance: Submission read_group_qc 100 5.487 3.888 1.60
@SubmissionPerformanceTests @Performance: Submission read_group_qc 1000 36.785 22.835 13.95
@SubmissionPerformanceTests @Performance: Submission sample 10 0.666 0.32 0.35
@SubmissionPerformanceTests @Performance: Submission sample 100 3.346 2.266 1.08
@SubmissionPerformanceTests @Performance: Submission sample 1000 27.918 23.301 4.62
@SubmissionPerformanceTests @Performance: Submission slide 10 0.432 0.31 0.12
@SubmissionPerformanceTests @Performance: Submission slide 100 2.785 2.175 0.61
@SubmissionPerformanceTests @Performance: Submission slide 1000 29.651 21.047 8.60
@SubmissionPerformanceTests @Performance: Submission slide_count 100 2.692 1.919 0.77
@SubmissionPerformanceTests @Performance: Submission slide_count 1000 28.399 19.228 9.17
@SubmissionPerformanceTests @Performance: Submission slide_image 10 2.079 4.318 -2.24
@SubmissionPerformanceTests @Performance: Submission slide_image 100 20.023 16.698 3.33
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 10 2.371 2.21 0.16
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 100 21.306 17.821 3.49
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 10 2.359 1.846 0.51
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 100 20.673 16.634 4.04
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 10 2.432 1.882 0.55
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 100 20.005 17.486 2.52
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 10 2.08 1.812 0.27
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 100 20.759 16.547 4.21
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 10 2.388 1.838 0.55
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 100 22.529 17.556 4.97
@SubmissionPerformanceTests @Performance: Submission treatment 10 0.386 0.292 0.09
@SubmissionPerformanceTests @Performance: Submission treatment 100 3.004 1.914 1.09
@SubmissionPerformanceTests @Performance: Submission treatment 1000 27.072 19.6 7.47