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uc-cdis / peregrine

GraphQL search API service
Apache License 2.0
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Feat/arborist #138

Closed paulineribeyre closed 4 years ago

paulineribeyre commented 5 years ago

Breaking Changes

Dependency updates

Deployment changes

PlanXCyborg commented 5 years ago

Jenkins Build 1 : time taken 32 min Check the https://jenkins.planx-pla.net/job/Performance%20tests%20for%20uc-cdis/job/peregrine/job/PR-138/1/display/redirect

Test results: Passed: 109, Failed: 0, Skipped: 0

Test Time (PR) Time (master) Diff
@ExportPerformanceTests @Performance: Export all nodes of type: aliquot 0.201 0.22 -0.02
@ExportPerformanceTests @Performance: Export all nodes of type: case 0.263 0.365 -0.10
@ExportPerformanceTests @Performance: Export all nodes of type: experiment 0.4 0.303 0.10
@ExportPerformanceTests @Performance: Export all nodes of type: read_group 0.37 0.447 -0.08
@ExportPerformanceTests @Performance: Export all nodes of type: read_group_qc 0.084 0.103 -0.02
@ExportPerformanceTests @Performance: Export all nodes of type: sample 0.504 0.351 0.15
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: case 0.332 0.303 0.03
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: experiment 0.238 0.32 -0.08
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group 0.124 0.075 0.05
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group_qc 0.062 0.142 -0.08
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: sample 0.091 0.325 -0.23
@QueryPerformanceTests @Performance: Executing bottomUp query # 0 0.669 0.493 0.18
@QueryPerformanceTests @Performance: Executing bottomUp query # 1 0.597 0.539 0.06
@QueryPerformanceTests @Performance: Executing bottomUp query # 2 0.645 0.434 0.21
@QueryPerformanceTests @Performance: Executing bottomUp query # 3 0.591 0.369 0.22
@QueryPerformanceTests @Performance: Executing bottomUp query # 4 0.391 0.303 0.09
@QueryPerformanceTests @Performance: Executing bottomUp query # 5 0.347 0.2 0.15
@QueryPerformanceTests @Performance: Executing bottomUp query # 6 0.209 0.132 0.08
@QueryPerformanceTests @Performance: Executing bottomUp query # 7 0.109 0.074 0.03
@QueryPerformanceTests @Performance: Executing topDown query # 0 0.089 0.095 -0.01
@QueryPerformanceTests @Performance: Executing topDown query # 1 0.203 0.137 0.07
@QueryPerformanceTests @Performance: Executing topDown query # 2 0.18 0.095 0.09
@QueryPerformanceTests @Performance: Executing topDown query # 3 0.196 0.245 -0.05
@QueryPerformanceTests @Performance: Executing topDown query # 4 0.417 0.224 0.19
@QueryPerformanceTests @Performance: Executing topDown query # 5 0.381 0.279 0.10
@QueryPerformanceTests @Performance: Executing topDown query # 6 0.564 0.376 0.19
@QueryPerformanceTests @Performance: Executing topDown query # 7 0.635 0.448 0.19
@SubmissionPerformanceTests @Performance: Submission acknowledgement 10 0.462 0.311 0.15
@SubmissionPerformanceTests @Performance: Submission acknowledgement 100 2.872 2.03 0.84
@SubmissionPerformanceTests @Performance: Submission acknowledgement 1000 30.253 19.593 10.66
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 100 18.413 17.276 1.14
@SubmissionPerformanceTests @Performance: Submission aliquot 10 0.386 0.283 0.10
@SubmissionPerformanceTests @Performance: Submission aliquot 100 2.988 2.031 0.96
@SubmissionPerformanceTests @Performance: Submission aliquot 1000 30.541 19.594 10.95
@SubmissionPerformanceTests @Performance: Submission case 10 0.365 0.419 -0.05
@SubmissionPerformanceTests @Performance: Submission case 100 3.052 2.452 0.60
@SubmissionPerformanceTests @Performance: Submission case 1000 29.088 19.552 9.54
@SubmissionPerformanceTests @Performance: Submission clinical_test 10 0.694 0.359 0.34
@SubmissionPerformanceTests @Performance: Submission clinical_test 100 3.145 2.904 0.24
@SubmissionPerformanceTests @Performance: Submission clinical_test 1000 31.623 22.976 8.65
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 10 0.553 0.615 -0.06
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 100 3.265 2.263 1.00
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 1000 28.849 18.952 9.90
@SubmissionPerformanceTests @Performance: Submission demographic 10 0.415 0.358 0.06
@SubmissionPerformanceTests @Performance: Submission demographic 100 3.278 2.301 0.98
@SubmissionPerformanceTests @Performance: Submission demographic 1000 29.855 20.726 9.13
@SubmissionPerformanceTests @Performance: Submission diagnosis 10 0.46 0.346 0.11
@SubmissionPerformanceTests @Performance: Submission diagnosis 100 3.602 2.245 1.36
@SubmissionPerformanceTests @Performance: Submission diagnosis 1000 33.89 24.803 9.09
@SubmissionPerformanceTests @Performance: Submission experiment 100 2.92 2.24 0.68
@SubmissionPerformanceTests @Performance: Submission experiment 1000 28.838 18.465 10.37
@SubmissionPerformanceTests @Performance: Submission experimental_metadata 100 18.683 17.709 0.97
@SubmissionPerformanceTests @Performance: Submission exposure 10 0.373 0.313 0.06
@SubmissionPerformanceTests @Performance: Submission exposure 100 3.229 1.973 1.26
@SubmissionPerformanceTests @Performance: Submission exposure 1000 29.219 21.109 8.11
@SubmissionPerformanceTests @Performance: Submission family_history 10 0.375 0.304 0.07
@SubmissionPerformanceTests @Performance: Submission family_history 100 3.052 1.92 1.13
@SubmissionPerformanceTests @Performance: Submission family_history 1000 30.16 20.677 9.48
@SubmissionPerformanceTests @Performance: Submission keyword 10 0.576 0.287 0.29
@SubmissionPerformanceTests @Performance: Submission keyword 100 2.859 2.006 0.85
@SubmissionPerformanceTests @Performance: Submission keyword 1000 30.467 19.782 10.68
@SubmissionPerformanceTests @Performance: Submission publication 10 0.36 0.32 0.04
@SubmissionPerformanceTests @Performance: Submission publication 100 2.845 2.438 0.41
@SubmissionPerformanceTests @Performance: Submission publication 1000 28.563 19.36 9.20
@SubmissionPerformanceTests @Performance: Submission read_group 10 0.436 0.48 -0.04
@SubmissionPerformanceTests @Performance: Submission read_group 100 2.98 2.53 0.45
@SubmissionPerformanceTests @Performance: Submission read_group 1000 30.922 22.273 8.65
@SubmissionPerformanceTests @Performance: Submission read_group_qc 10 0.557 0.446 0.11
@SubmissionPerformanceTests @Performance: Submission read_group_qc 100 4.552 3.366 1.19
@SubmissionPerformanceTests @Performance: Submission read_group_qc 1000 33.693 23.178 10.52
@SubmissionPerformanceTests @Performance: Submission sample 10 0.464 0.372 0.09
@SubmissionPerformanceTests @Performance: Submission sample 100 3.184 2.379 0.81
@SubmissionPerformanceTests @Performance: Submission sample 1000 31.878 22.055 9.82
@SubmissionPerformanceTests @Performance: Submission slide 10 0.466 0.368 0.10
@SubmissionPerformanceTests @Performance: Submission slide 100 3.026 2.284 0.74
@SubmissionPerformanceTests @Performance: Submission slide 1000 31.385 22.098 9.29
@SubmissionPerformanceTests @Performance: Submission slide_count 10 0.467 0.32 0.15
@SubmissionPerformanceTests @Performance: Submission slide_count 100 2.938 2.221 0.72
@SubmissionPerformanceTests @Performance: Submission slide_count 1000 29.803 19.394 10.41
@SubmissionPerformanceTests @Performance: Submission slide_image 100 17.178 18.189 -1.01
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 100 18.364 17.096 1.27
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 10 1.863 1.731 0.13
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 10 1.899 6.99 -5.09
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 10 2.159 1.719 0.44
@SubmissionPerformanceTests @Performance: Submission treatment 100 2.988 2.016 0.97
@SubmissionPerformanceTests @Performance: Submission treatment 1000 28.526 20.421 8.10
PlanXCyborg commented 5 years ago

Jenkins Build 3 : time taken 42 min Check the https://jenkins.planx-pla.net/job/Performance%20tests%20for%20uc-cdis/job/peregrine/job/PR-138/3/display/redirect

Test results: Passed: 109, Failed: 0, Skipped: 0

Test Time (PR) Time (master) Diff
@ExportPerformanceTests @Performance: Export all nodes of type: aliquot 0.205 0.246 -0.04
@ExportPerformanceTests @Performance: Export all nodes of type: experiment 0.264 0.283 -0.02
@ExportPerformanceTests @Performance: Export all nodes of type: program 0.085 0.052 0.03
@ExportPerformanceTests @Performance: Export all nodes of type: project 0.05 0.082 -0.03
@ExportPerformanceTests @Performance: Export all nodes of type: read_group 0.485 0.392 0.09
@ExportPerformanceTests @Performance: Export all nodes of type: read_group_qc 0.092 0.079 0.01
@ExportPerformanceTests @Performance: Export all nodes of type: sample 0.367 0.329 0.04
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: aliquot 0.219 0.262 -0.04
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: case 0.293 0.469 -0.18
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: experiment 0.508 0.278 0.23
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group 0.18 0.071 0.11
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group_qc 0.099 0.085 0.01
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: sample 0.096 0.112 -0.02
@QueryPerformanceTests @Performance: Executing bottomUp query # 0 0.992 0.644 0.35
@QueryPerformanceTests @Performance: Executing bottomUp query # 1 0.879 0.747 0.13
@QueryPerformanceTests @Performance: Executing bottomUp query # 2 0.616 0.705 -0.09
@QueryPerformanceTests @Performance: Executing bottomUp query # 3 0.672 0.477 0.19
@QueryPerformanceTests @Performance: Executing bottomUp query # 4 0.494 0.47 0.02
@QueryPerformanceTests @Performance: Executing bottomUp query # 5 0.39 0.34 0.05
@QueryPerformanceTests @Performance: Executing bottomUp query # 6 0.252 0.237 0.02
@QueryPerformanceTests @Performance: Executing bottomUp query # 7 0.13 0.094 0.04
@QueryPerformanceTests @Performance: Executing topDown query # 0 0.118 0.072 0.05
@QueryPerformanceTests @Performance: Executing topDown query # 1 0.202 0.106 0.10
@QueryPerformanceTests @Performance: Executing topDown query # 2 0.299 0.148 0.15
@QueryPerformanceTests @Performance: Executing topDown query # 3 0.235 0.187 0.05
@QueryPerformanceTests @Performance: Executing topDown query # 4 0.497 0.282 0.22
@QueryPerformanceTests @Performance: Executing topDown query # 6 0.705 0.615 0.09
@QueryPerformanceTests @Performance: Executing topDown query # 7 0.715 0.65 0.06
@SubmissionPerformanceTests @Performance: Submission acknowledgement 100 3.331 3.742 -0.41
@SubmissionPerformanceTests @Performance: Submission acknowledgement 1000 28.314 33.836 -5.52
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 10 2.185 2.001 0.18
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 100 20.401 18.906 1.49
@SubmissionPerformanceTests @Performance: Submission aliquot 10 0.724 0.5 0.22
@SubmissionPerformanceTests @Performance: Submission case 10 0.499 0.698 -0.20
@SubmissionPerformanceTests @Performance: Submission case 100 3.074 4.587 -1.51
@SubmissionPerformanceTests @Performance: Submission clinical_test 10 0.592 0.507 0.08
@SubmissionPerformanceTests @Performance: Submission clinical_test 100 3.347 3.85 -0.50
@SubmissionPerformanceTests @Performance: Submission clinical_test 1000 33.107 35.996 -2.89
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 10 1.082 0.786 0.30
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 100 3.1 3.887 -0.79
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 1000 31.405 36.021 -4.62
@SubmissionPerformanceTests @Performance: Submission demographic 100 3.307 3.756 -0.45
@SubmissionPerformanceTests @Performance: Submission demographic 1000 31.019 34.469 -3.45
@SubmissionPerformanceTests @Performance: Submission diagnosis 10 0.565 0.672 -0.11
@SubmissionPerformanceTests @Performance: Submission diagnosis 100 3.7 4.322 -0.62
@SubmissionPerformanceTests @Performance: Submission diagnosis 1000 35.677 37.718 -2.04
@SubmissionPerformanceTests @Performance: Submission experiment 10 0.745 0.701 0.04
@SubmissionPerformanceTests @Performance: Submission experiment 100 2.971 3.721 -0.75
@SubmissionPerformanceTests @Performance: Submission experiment 1000 30.719 34.956 -4.24
@SubmissionPerformanceTests @Performance: Submission experimental_metadata 10 2.219 1.938 0.28
@SubmissionPerformanceTests @Performance: Submission experimental_metadata 100 20.467 18.885 1.58
@SubmissionPerformanceTests @Performance: Submission exposure 10 0.464 0.638 -0.17
@SubmissionPerformanceTests @Performance: Submission exposure 1000 30.915 35.811 -4.90
@SubmissionPerformanceTests @Performance: Submission family_history 1000 29.675 36.542 -6.87
@SubmissionPerformanceTests @Performance: Submission keyword 10 0.404 0.963 -0.56
@SubmissionPerformanceTests @Performance: Submission keyword 100 3.17 3.579 -0.41
@SubmissionPerformanceTests @Performance: Submission keyword 1000 27.745 33.081 -5.34
@SubmissionPerformanceTests @Performance: Submission publication 10 0.577 0.504 0.07
@SubmissionPerformanceTests @Performance: Submission publication 100 3.312 4.063 -0.75
@SubmissionPerformanceTests @Performance: Submission publication 1000 28.488 33.507 -5.02
@SubmissionPerformanceTests @Performance: Submission read_group 10 0.577 0.633 -0.06
@SubmissionPerformanceTests @Performance: Submission read_group 1000 36.512 32.508 4.00
@SubmissionPerformanceTests @Performance: Submission read_group_qc 10 0.589 0.659 -0.07
@SubmissionPerformanceTests @Performance: Submission read_group_qc 100 4.59 5.132 -0.54
@SubmissionPerformanceTests @Performance: Submission sample 10 0.901 0.607 0.29
@SubmissionPerformanceTests @Performance: Submission sample 100 3.48 4.126 -0.65
@SubmissionPerformanceTests @Performance: Submission slide 10 0.581 0.711 -0.13
@SubmissionPerformanceTests @Performance: Submission slide 100 3.427 3.677 -0.25
@SubmissionPerformanceTests @Performance: Submission slide 1000 33.781 37.935 -4.15
@SubmissionPerformanceTests @Performance: Submission slide_count 10 0.511 0.589 -0.08
@SubmissionPerformanceTests @Performance: Submission slide_count 100 3.496 4.354 -0.86
@SubmissionPerformanceTests @Performance: Submission slide_count 1000 29.376 35.434 -6.06
@SubmissionPerformanceTests @Performance: Submission slide_image 10 2.028 1.927 0.10
@SubmissionPerformanceTests @Performance: Submission slide_image 100 20.368 18.688 1.68
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 10 2.437 2.206 0.23
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 100 19.894 18.825 1.07
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 100 19.678 18.228 1.45
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 10 2.589 1.921 0.67
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 10 2.042 1.9 0.14
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 100 20.601 18.457 2.14
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 10 2.107 1.964 0.14
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 100 19.889 18.344 1.55
@SubmissionPerformanceTests @Performance: Submission treatment 10 0.484 0.442 0.04
@SubmissionPerformanceTests @Performance: Submission treatment 100 3.506 4.135 -0.63
@SubmissionPerformanceTests @Performance: Submission treatment 1000 31.175 36.022 -4.85
PlanXCyborg commented 5 years ago

Jenkins Build 4 : time taken 1 hr 4 min Check the https://jenkins.planx-pla.net/job/Performance%20tests%20for%20uc-cdis/job/peregrine/job/PR-138/4/display/redirect

Test results: Passed: 109, Failed: 0, Skipped: 0

Test Time (PR) Time (master) Diff
@ExportPerformanceTests @Performance: Export all nodes of type: aliquot 0.503 0.246 0.26
@ExportPerformanceTests @Performance: Export all nodes of type: case 0.295 0.572 -0.28
@ExportPerformanceTests @Performance: Export all nodes of type: experiment 0.388 0.283 0.11
@ExportPerformanceTests @Performance: Export all nodes of type: program 0.128 0.052 0.08
@ExportPerformanceTests @Performance: Export all nodes of type: project 0.101 0.082 0.02
@ExportPerformanceTests @Performance: Export all nodes of type: read_group 0.787 0.392 0.40
@ExportPerformanceTests @Performance: Export all nodes of type: read_group_qc 0.101 0.079 0.02
@ExportPerformanceTests @Performance: Export all nodes of type: sample 0.502 0.329 0.17
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: case 0.441 0.469 -0.03
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: experiment 0.3 0.278 0.02
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group 0.189 0.071 0.12
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group_qc 0.17 0.085 0.09
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: sample 0.093 0.112 -0.02
@QueryPerformanceTests @Performance: Executing bottomUp query # 0 1.005 0.644 0.36
@QueryPerformanceTests @Performance: Executing bottomUp query # 1 0.653 0.747 -0.09
@QueryPerformanceTests @Performance: Executing bottomUp query # 2 0.543 0.705 -0.16
@QueryPerformanceTests @Performance: Executing bottomUp query # 3 0.709 0.477 0.23
@QueryPerformanceTests @Performance: Executing bottomUp query # 5 0.271 0.34 -0.07
@QueryPerformanceTests @Performance: Executing bottomUp query # 6 0.274 0.237 0.04
@QueryPerformanceTests @Performance: Executing topDown query # 0 0.085 0.072 0.01
@QueryPerformanceTests @Performance: Executing topDown query # 2 0.2 0.148 0.05
@QueryPerformanceTests @Performance: Executing topDown query # 3 0.197 0.187 0.01
@QueryPerformanceTests @Performance: Executing topDown query # 4 0.375 0.282 0.09
@QueryPerformanceTests @Performance: Executing topDown query # 5 0.696 0.503 0.19
@QueryPerformanceTests @Performance: Executing topDown query # 6 0.648 0.615 0.03
@QueryPerformanceTests @Performance: Executing topDown query # 7 0.594 0.65 -0.06
@SubmissionPerformanceTests @Performance: Submission acknowledgement 10 0.474 0.431 0.04
@SubmissionPerformanceTests @Performance: Submission acknowledgement 100 2.954 3.742 -0.79
@SubmissionPerformanceTests @Performance: Submission acknowledgement 1000 27.88 33.836 -5.96
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 10 1.738 2.001 -0.26
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 100 17.571 18.906 -1.34
@SubmissionPerformanceTests @Performance: Submission aliquot 10 0.429 0.5 -0.07
@SubmissionPerformanceTests @Performance: Submission aliquot 100 3.251 3.606 -0.36
@SubmissionPerformanceTests @Performance: Submission aliquot 1000 29.606 33.999 -4.39
@SubmissionPerformanceTests @Performance: Submission case 10 0.394 0.698 -0.30
@SubmissionPerformanceTests @Performance: Submission case 100 3.285 4.587 -1.30
@SubmissionPerformanceTests @Performance: Submission case 1000 29.719 34.429 -4.71
@SubmissionPerformanceTests @Performance: Submission clinical_test 10 0.449 0.507 -0.06
@SubmissionPerformanceTests @Performance: Submission clinical_test 100 3.416 3.85 -0.43
@SubmissionPerformanceTests @Performance: Submission clinical_test 1000 31.205 35.996 -4.79
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 10 0.641 0.786 -0.15
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 100 3.258 3.887 -0.63
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 1000 29.409 36.021 -6.61
@SubmissionPerformanceTests @Performance: Submission demographic 10 0.499 0.457 0.04
@SubmissionPerformanceTests @Performance: Submission demographic 100 3.013 3.756 -0.74
@SubmissionPerformanceTests @Performance: Submission demographic 1000 30.326 34.469 -4.14
@SubmissionPerformanceTests @Performance: Submission diagnosis 10 0.466 0.672 -0.21
@SubmissionPerformanceTests @Performance: Submission diagnosis 100 3.411 4.322 -0.91
@SubmissionPerformanceTests @Performance: Submission diagnosis 1000 33.718 37.718 -4.00
@SubmissionPerformanceTests @Performance: Submission experiment 10 0.367 0.701 -0.33
@SubmissionPerformanceTests @Performance: Submission experiment 100 2.887 3.721 -0.83
@SubmissionPerformanceTests @Performance: Submission experiment 1000 29.275 34.956 -5.68
@SubmissionPerformanceTests @Performance: Submission exposure 10 0.472 0.638 -0.17
@SubmissionPerformanceTests @Performance: Submission exposure 100 3.068 3.566 -0.50
@SubmissionPerformanceTests @Performance: Submission exposure 1000 28.566 35.811 -7.25
@SubmissionPerformanceTests @Performance: Submission family_history 10 0.418 0.525 -0.11
@SubmissionPerformanceTests @Performance: Submission family_history 100 2.934 3.532 -0.60
@SubmissionPerformanceTests @Performance: Submission family_history 1000 30.412 36.542 -6.13
@SubmissionPerformanceTests @Performance: Submission keyword 10 0.404 0.963 -0.56
@SubmissionPerformanceTests @Performance: Submission keyword 100 2.653 3.579 -0.93
@SubmissionPerformanceTests @Performance: Submission keyword 1000 28.895 33.081 -4.19
@SubmissionPerformanceTests @Performance: Submission publication 10 0.351 0.504 -0.15
@SubmissionPerformanceTests @Performance: Submission publication 100 2.827 4.063 -1.24
@SubmissionPerformanceTests @Performance: Submission publication 1000 29.663 33.507 -3.84
@SubmissionPerformanceTests @Performance: Submission read_group 10 0.483 0.633 -0.15
@SubmissionPerformanceTests @Performance: Submission read_group 100 3.965 3.478 0.49
@SubmissionPerformanceTests @Performance: Submission read_group_qc 10 0.589 0.659 -0.07
@SubmissionPerformanceTests @Performance: Submission read_group_qc 100 4.714 5.132 -0.42
@SubmissionPerformanceTests @Performance: Submission read_group_qc 1000 33.889 35.799 -1.91
@SubmissionPerformanceTests @Performance: Submission sample 10 0.414 0.607 -0.19
@SubmissionPerformanceTests @Performance: Submission sample 100 3.546 4.126 -0.58
@SubmissionPerformanceTests @Performance: Submission sample 1000 34.314 36.686 -2.37
@SubmissionPerformanceTests @Performance: Submission slide 10 0.466 0.711 -0.25
@SubmissionPerformanceTests @Performance: Submission slide 100 3.344 3.677 -0.33
@SubmissionPerformanceTests @Performance: Submission slide 1000 31.876 37.935 -6.06
@SubmissionPerformanceTests @Performance: Submission slide_count 10 0.416 0.589 -0.17
@SubmissionPerformanceTests @Performance: Submission slide_count 100 3.2 4.354 -1.15
@SubmissionPerformanceTests @Performance: Submission slide_count 1000 32.217 35.434 -3.22
@SubmissionPerformanceTests @Performance: Submission slide_image 100 17.025 18.688 -1.66
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 10 1.958 2.206 -0.25
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 100 17.001 18.825 -1.82
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 10 1.907 2.101 -0.19
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 100 16.763 18.228 -1.47
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 10 1.726 1.921 -0.20
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 100 17.051 18.927 -1.88
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 10 1.713 1.9 -0.19
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 100 16.58 18.457 -1.88
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 10 1.747 1.964 -0.22
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 100 17.003 18.344 -1.34
@SubmissionPerformanceTests @Performance: Submission treatment 100 2.977 4.135 -1.16
@SubmissionPerformanceTests @Performance: Submission treatment 1000 31.326 36.022 -4.70
PlanXCyborg commented 5 years ago

Jenkins Build 6 : time taken 44 min Check the https://jenkins.planx-pla.net/job/Performance%20tests%20for%20uc-cdis/job/peregrine/job/PR-138/6/display/redirect

Test results: Passed: 109, Failed: 0, Skipped: 0

Test Time (PR) Time (master) Diff
@ExportPerformanceTests @Performance: Export all nodes of type: aliquot 0.274 0.111 0.16
@ExportPerformanceTests @Performance: Export all nodes of type: case 0.315 0.087 0.23
@ExportPerformanceTests @Performance: Export all nodes of type: experiment 0.28 0.314 -0.03
@ExportPerformanceTests @Performance: Export all nodes of type: program 0.065 0.056 0.01
@ExportPerformanceTests @Performance: Export all nodes of type: read_group 0.462 0.132 0.33
@ExportPerformanceTests @Performance: Export all nodes of type: read_group_qc 0.097 0.13 -0.03
@ExportPerformanceTests @Performance: Export all nodes of type: sample 0.404 0.128 0.28
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: aliquot 0.192 0.224 -0.03
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: case 0.659 0.429 0.23
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: experiment 0.384 0.327 0.06
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group 0.069 0.164 -0.10
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group_qc 0.094 0.07 0.02
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: sample 0.092 0.374 -0.28
@QueryPerformanceTests @Performance: Executing bottomUp query # 0 0.587 0.353 0.23
@QueryPerformanceTests @Performance: Executing bottomUp query # 1 0.804 0.268 0.54
@QueryPerformanceTests @Performance: Executing bottomUp query # 3 0.571 0.669 -0.10
@QueryPerformanceTests @Performance: Executing bottomUp query # 4 0.416 0.473 -0.06
@QueryPerformanceTests @Performance: Executing bottomUp query # 5 0.469 0.305 0.16
@QueryPerformanceTests @Performance: Executing bottomUp query # 6 0.178 0.218 -0.04
@QueryPerformanceTests @Performance: Executing bottomUp query # 7 0.163 0.082 0.08
@QueryPerformanceTests @Performance: Executing topDown query # 0 0.141 0.069 0.07
@QueryPerformanceTests @Performance: Executing topDown query # 1 0.117 0.11 0.01
@QueryPerformanceTests @Performance: Executing topDown query # 2 0.123 0.098 0.03
@QueryPerformanceTests @Performance: Executing topDown query # 3 0.284 0.269 0.02
@QueryPerformanceTests @Performance: Executing topDown query # 4 0.296 0.221 0.08
@QueryPerformanceTests @Performance: Executing topDown query # 5 0.573 0.187 0.39
@QueryPerformanceTests @Performance: Executing topDown query # 6 0.759 0.35 0.41
@QueryPerformanceTests @Performance: Executing topDown query # 7 0.569 0.333 0.24
@SubmissionPerformanceTests @Performance: Submission acknowledgement 10 0.516 0.602 -0.09
@SubmissionPerformanceTests @Performance: Submission acknowledgement 100 2.852 4.566 -1.71
@SubmissionPerformanceTests @Performance: Submission acknowledgement 1000 29.31 40.228 -10.92
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 10 2.448 2.138 0.31
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 100 23.925 20.195 3.73
@SubmissionPerformanceTests @Performance: Submission aliquot 10 0.409 0.736 -0.33
@SubmissionPerformanceTests @Performance: Submission aliquot 100 3.691 4.86 -1.17
@SubmissionPerformanceTests @Performance: Submission case 10 0.395 0.78 -0.38
@SubmissionPerformanceTests @Performance: Submission case 100 3.149 4.649 -1.50
@SubmissionPerformanceTests @Performance: Submission case 1000 31.32 44.871 -13.55
@SubmissionPerformanceTests @Performance: Submission clinical_test 10 0.458 0.663 -0.20
@SubmissionPerformanceTests @Performance: Submission clinical_test 100 3.33 5.118 -1.79
@SubmissionPerformanceTests @Performance: Submission clinical_test 1000 32.757 30.481 2.28
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 10 0.65 0.693 -0.04
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 100 3.017 4.742 -1.73
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 1000 30.194 44.688 -14.49
@SubmissionPerformanceTests @Performance: Submission demographic 10 0.433 0.621 -0.19
@SubmissionPerformanceTests @Performance: Submission demographic 100 3.215 5.182 -1.97
@SubmissionPerformanceTests @Performance: Submission demographic 1000 31.058 28.838 2.22
@SubmissionPerformanceTests @Performance: Submission diagnosis 10 0.569 0.681 -0.11
@SubmissionPerformanceTests @Performance: Submission diagnosis 100 3.474 5.221 -1.75
@SubmissionPerformanceTests @Performance: Submission experiment 10 0.415 0.846 -0.43
@SubmissionPerformanceTests @Performance: Submission experiment 100 3.218 4.874 -1.66
@SubmissionPerformanceTests @Performance: Submission experiment 1000 30.497 42.583 -12.09
@SubmissionPerformanceTests @Performance: Submission experimental_metadata 10 2.508 2.174 0.33
@SubmissionPerformanceTests @Performance: Submission exposure 10 0.546 0.642 -0.10
@SubmissionPerformanceTests @Performance: Submission exposure 100 3.525 4.765 -1.24
@SubmissionPerformanceTests @Performance: Submission exposure 1000 30.548 28.908 1.64
@SubmissionPerformanceTests @Performance: Submission family_history 10 0.504 0.559 -0.06
@SubmissionPerformanceTests @Performance: Submission family_history 100 3.147 4.393 -1.25
@SubmissionPerformanceTests @Performance: Submission family_history 1000 30.387 28.368 2.02
@SubmissionPerformanceTests @Performance: Submission keyword 10 0.435 0.617 -0.18
@SubmissionPerformanceTests @Performance: Submission keyword 100 3.016 4.477 -1.46
@SubmissionPerformanceTests @Performance: Submission keyword 1000 29.199 39.666 -10.47
@SubmissionPerformanceTests @Performance: Submission publication 10 0.416 0.754 -0.34
@SubmissionPerformanceTests @Performance: Submission publication 100 3.029 4.186 -1.16
@SubmissionPerformanceTests @Performance: Submission publication 1000 28.202 44.981 -16.78
@SubmissionPerformanceTests @Performance: Submission read_group 10 0.588 0.663 -0.07
@SubmissionPerformanceTests @Performance: Submission read_group 100 3.795 4.723 -0.93
@SubmissionPerformanceTests @Performance: Submission read_group_qc 10 0.666 0.983 -0.32
@SubmissionPerformanceTests @Performance: Submission read_group_qc 100 4.736 6.195 -1.46
@SubmissionPerformanceTests @Performance: Submission sample 10 0.406 0.8 -0.39
@SubmissionPerformanceTests @Performance: Submission sample 100 3.679 4.956 -1.28
@SubmissionPerformanceTests @Performance: Submission sample 1000 34.548 32.646 1.90
@SubmissionPerformanceTests @Performance: Submission slide 10 0.497 0.746 -0.25
@SubmissionPerformanceTests @Performance: Submission slide 100 3.117 5.261 -2.14
@SubmissionPerformanceTests @Performance: Submission slide_count 10 0.38 0.78 -0.40
@SubmissionPerformanceTests @Performance: Submission slide_count 100 3.135 4.932 -1.80
@SubmissionPerformanceTests @Performance: Submission slide_image 100 24.232 20.112 4.12
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 10 2.456 2.709 -0.25
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 100 24.318 19.48 4.84
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 10 2.423 2.262 0.16
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 100 25.522 20.069 5.45
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 10 2.654 2.218 0.44
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 100 23.258 20.123 3.14
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 100 23.15 19.95 3.20
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 10 2.383 2.187 0.20
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 100 24.357 19.159 5.20
@SubmissionPerformanceTests @Performance: Submission treatment 10 0.449 0.62 -0.17
@SubmissionPerformanceTests @Performance: Submission treatment 100 3.062 4.861 -1.80
PlanXCyborg commented 4 years ago

Jenkins Build 8 : time taken 37 min Check the https://jenkins.planx-pla.net/job/Performance%20tests%20for%20uc-cdis/job/peregrine/job/PR-138/8/display/redirect

Test results: Passed: 109, Failed: 0, Skipped: 0

Test Time (PR) Time (master) Diff
@ExportPerformanceTests @Performance: Export all nodes of type: aliquot 0.284 0.248 0.04
@ExportPerformanceTests @Performance: Export all nodes of type: program 0.113 0.052 0.06
@ExportPerformanceTests @Performance: Export all nodes of type: project 0.094 0.043 0.05
@ExportPerformanceTests @Performance: Export all nodes of type: read_group 0.405 0.476 -0.07
@ExportPerformanceTests @Performance: Export all nodes of type: read_group_qc 0.095 0.11 -0.02
@ExportPerformanceTests @Performance: Export all nodes of type: sample 0.414 0.655 -0.24
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: aliquot 0.169 0.254 -0.09
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: case 0.283 0.264 0.02
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: experiment 0.324 0.192 0.13
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group 0.06 0.118 -0.06
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group_qc 0.084 0.078 0.01
@ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: sample 0.144 0.093 0.05
@QueryPerformanceTests @Performance: Executing bottomUp query # 1 0.636 0.728 -0.09
@QueryPerformanceTests @Performance: Executing bottomUp query # 2 0.661 0.798 -0.14
@QueryPerformanceTests @Performance: Executing bottomUp query # 3 0.513 0.65 -0.14
@QueryPerformanceTests @Performance: Executing bottomUp query # 4 0.42 0.382 0.04
@QueryPerformanceTests @Performance: Executing bottomUp query # 5 0.416 0.44 -0.02
@QueryPerformanceTests @Performance: Executing bottomUp query # 7 0.112 0.077 0.04
@QueryPerformanceTests @Performance: Executing topDown query # 0 0.13 0.112 0.02
@QueryPerformanceTests @Performance: Executing topDown query # 1 0.124 0.086 0.04
@QueryPerformanceTests @Performance: Executing topDown query # 2 0.159 0.185 -0.03
@QueryPerformanceTests @Performance: Executing topDown query # 3 0.248 0.233 0.02
@QueryPerformanceTests @Performance: Executing topDown query # 4 0.423 0.397 0.03
@QueryPerformanceTests @Performance: Executing topDown query # 5 0.391 0.443 -0.05
@QueryPerformanceTests @Performance: Executing topDown query # 6 0.64 0.903 -0.26
@QueryPerformanceTests @Performance: Executing topDown query # 7 0.862 0.706 0.16
@SubmissionPerformanceTests @Performance: Submission acknowledgement 10 0.391 0.437 -0.05
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 10 2.16 1.72 0.44
@SubmissionPerformanceTests @Performance: Submission aligned_reads_index 100 22.722 15.996 6.73
@SubmissionPerformanceTests @Performance: Submission aliquot 10 0.527 0.426 0.10
@SubmissionPerformanceTests @Performance: Submission case 10 0.485 0.417 0.07
@SubmissionPerformanceTests @Performance: Submission clinical_test 1000 32.849 34.607 -1.76
@SubmissionPerformanceTests @Performance: Submission core_metadata_collection 100 3.114 3.655 -0.54
@SubmissionPerformanceTests @Performance: Submission diagnosis 10 0.508 0.559 -0.05
@SubmissionPerformanceTests @Performance: Submission experiment 10 0.543 0.672 -0.13
@SubmissionPerformanceTests @Performance: Submission experiment 100 3.653 3.04 0.61
@SubmissionPerformanceTests @Performance: Submission experimental_metadata 10 2.189 1.738 0.45
@SubmissionPerformanceTests @Performance: Submission experimental_metadata 100 20.684 16.371 4.31
@SubmissionPerformanceTests @Performance: Submission exposure 100 2.99 3.591 -0.60
@SubmissionPerformanceTests @Performance: Submission exposure 1000 30.072 33.067 -3.00
@SubmissionPerformanceTests @Performance: Submission family_history 10 0.453 0.534 -0.08
@SubmissionPerformanceTests @Performance: Submission keyword 10 0.394 0.462 -0.07
@SubmissionPerformanceTests @Performance: Submission keyword 100 3.929 3.066 0.86
@SubmissionPerformanceTests @Performance: Submission keyword 1000 28.418 30.235 -1.82
@SubmissionPerformanceTests @Performance: Submission publication 100 3.927 3.199 0.73
@SubmissionPerformanceTests @Performance: Submission publication 1000 28.495 30.266 -1.77
@SubmissionPerformanceTests @Performance: Submission read_group 10 0.559 0.503 0.06
@SubmissionPerformanceTests @Performance: Submission read_group 100 4.063 3.636 0.43
@SubmissionPerformanceTests @Performance: Submission read_group_qc 10 0.867 0.657 0.21
@SubmissionPerformanceTests @Performance: Submission read_group_qc 100 5.105 5.623 -0.52
@SubmissionPerformanceTests @Performance: Submission read_group_qc 1000 34.268 38.55 -4.28
@SubmissionPerformanceTests @Performance: Submission sample 10 0.496 0.634 -0.14
@SubmissionPerformanceTests @Performance: Submission sample 100 3.398 3.128 0.27
@SubmissionPerformanceTests @Performance: Submission slide_count 10 0.508 0.453 0.06
@SubmissionPerformanceTests @Performance: Submission slide_count 1000 29.953 31.535 -1.58
@SubmissionPerformanceTests @Performance: Submission slide_image 10 2.382 1.827 0.55
@SubmissionPerformanceTests @Performance: Submission slide_image 100 21.967 16.661 5.31
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 10 2.156 1.812 0.34
@SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 100 21.087 17.255 3.83
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 10 2.223 1.632 0.59
@SubmissionPerformanceTests @Performance: Submission submitted_copy_number 100 22.128 15.807 6.32
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 10 2.259 1.875 0.38
@SubmissionPerformanceTests @Performance: Submission submitted_methylation 100 21.239 15.974 5.27
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 10 2.221 1.701 0.52
@SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 100 20.764 15.416 5.35
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 10 2.347 1.77 0.58
@SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 100 20.174 16.467 3.71
@SubmissionPerformanceTests @Performance: Submission treatment 1000 30.251 32.256 -2.01