PlanXCyborg
commented
4 years ago Jenkins Build 1 : time taken 41 min Check the https://jenkins.planx-pla.net/job/Performance%20tests%20for%20uc-cdis/job/peregrine/job/PR-140/1/display/redirect
Test results: Passed: 109, Failed: 0, Skipped: 0
| Test | Time (PR) |
Time (master) |
Diff |
|---|---|---|---|
| @ExportPerformanceTests @Performance: Export all nodes of type: aliquot | 0.302 | 0.236 | 0.07 |
| @ExportPerformanceTests @Performance: Export all nodes of type: case | 0.2 | 0.211 | -0.01 |
| @ExportPerformanceTests @Performance: Export all nodes of type: experiment | 0.299 | 0.272 | 0.03 |
| @ExportPerformanceTests @Performance: Export all nodes of type: program | 0.199 | 0.056 | 0.14 |
| @ExportPerformanceTests @Performance: Export all nodes of type: project | 0.113 | 0.041 | 0.07 |
| @ExportPerformanceTests @Performance: Export all nodes of type: read_group | 0.532 | 0.417 | 0.12 |
| @ExportPerformanceTests @Performance: Export all nodes of type: read_group_qc | 0.153 | 0.092 | 0.06 |
| @ExportPerformanceTests @Performance: Export all nodes of type: sample | 0.589 | 0.405 | 0.18 |
| @ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: experiment | 0.393 | 0.194 | 0.20 |
| @ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group | 0.273 | 0.079 | 0.19 |
| @ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: read_group_qc | 0.094 | 0.07 | 0.02 |
| @ExportPerformanceTests @Performance: Exporting a record by ID on nodes of type: sample | 0.199 | 0.098 | 0.10 |
| @QueryPerformanceTests @Performance: Executing bottomUp query # 0 | 0.68 | 0.847 | -0.17 |
| @QueryPerformanceTests @Performance: Executing bottomUp query # 1 | 0.818 | 0.646 | 0.17 |
| @QueryPerformanceTests @Performance: Executing bottomUp query # 2 | 0.794 | 0.615 | 0.18 |
| @QueryPerformanceTests @Performance: Executing bottomUp query # 3 | 0.571 | 0.535 | 0.04 |
| @QueryPerformanceTests @Performance: Executing bottomUp query # 4 | 0.528 | 0.447 | 0.08 |
| @QueryPerformanceTests @Performance: Executing bottomUp query # 5 | 0.291 | 0.374 | -0.08 |
| @QueryPerformanceTests @Performance: Executing bottomUp query # 6 | 0.384 | 0.316 | 0.07 |
| @QueryPerformanceTests @Performance: Executing bottomUp query # 7 | 0.114 | 0.129 | -0.01 |
| @QueryPerformanceTests @Performance: Executing topDown query # 0 | 0.093 | 0.11 | -0.02 |
| @QueryPerformanceTests @Performance: Executing topDown query # 1 | 0.225 | 0.144 | 0.08 |
| @QueryPerformanceTests @Performance: Executing topDown query # 2 | 0.157 | 0.17 | -0.01 |
| @QueryPerformanceTests @Performance: Executing topDown query # 3 | 0.291 | 0.274 | 0.02 |
| @QueryPerformanceTests @Performance: Executing topDown query # 4 | 0.308 | 0.374 | -0.07 |
| @QueryPerformanceTests @Performance: Executing topDown query # 5 | 0.409 | 0.507 | -0.10 |
| @QueryPerformanceTests @Performance: Executing topDown query # 6 | 0.587 | 0.553 | 0.03 |
| @QueryPerformanceTests @Performance: Executing topDown query # 7 | 0.693 | 0.937 | -0.24 |
| @SubmissionPerformanceTests @Performance: Submission acknowledgement 10 | 0.621 | 0.385 | 0.24 |
| @SubmissionPerformanceTests @Performance: Submission acknowledgement 100 | 3.371 | 3.818 | -0.45 |
| @SubmissionPerformanceTests @Performance: Submission acknowledgement 1000 | 29.718 | 25.647 | 4.07 |
| @SubmissionPerformanceTests @Performance: Submission aligned_reads_index 10 | 2.007 | 1.462 | 0.54 |
| @SubmissionPerformanceTests @Performance: Submission aligned_reads_index 100 | 19.196 | 14.382 | 4.81 |
| @SubmissionPerformanceTests @Performance: Submission aliquot 10 | 0.572 | 0.494 | 0.08 |
| @SubmissionPerformanceTests @Performance: Submission aliquot 100 | 3.706 | 2.786 | 0.92 |
| @SubmissionPerformanceTests @Performance: Submission aliquot 1000 | 32.499 | 28.697 | 3.80 |
| @SubmissionPerformanceTests @Performance: Submission case 10 | 0.733 | 0.374 | 0.36 |
| @SubmissionPerformanceTests @Performance: Submission case 100 | 3.716 | 2.765 | 0.95 |
| @SubmissionPerformanceTests @Performance: Submission case 1000 | 35.411 | 30.64 | 4.77 |
| @SubmissionPerformanceTests @Performance: Submission clinical_test 10 | 0.574 | 0.381 | 0.19 |
| @SubmissionPerformanceTests @Performance: Submission clinical_test 100 | 3.826 | 3.324 | 0.50 |
| @SubmissionPerformanceTests @Performance: Submission clinical_test 1000 | 39.497 | 29.8 | 9.70 |
| @SubmissionPerformanceTests @Performance: Submission core_metadata_collection 10 | 0.895 | 0.747 | 0.15 |
| @SubmissionPerformanceTests @Performance: Submission core_metadata_collection 1000 | 34.359 | 30.346 | 4.01 |
| @SubmissionPerformanceTests @Performance: Submission demographic 10 | 0.492 | 0.342 | 0.15 |
| @SubmissionPerformanceTests @Performance: Submission demographic 1000 | 35.893 | 30.059 | 5.83 |
| @SubmissionPerformanceTests @Performance: Submission diagnosis 10 | 0.643 | 0.421 | 0.22 |
| @SubmissionPerformanceTests @Performance: Submission diagnosis 100 | 3.874 | 3.324 | 0.55 |
| @SubmissionPerformanceTests @Performance: Submission experiment 10 | 0.755 | 0.48 | 0.28 |
| @SubmissionPerformanceTests @Performance: Submission experiment 100 | 3.635 | 2.87 | 0.77 |
| @SubmissionPerformanceTests @Performance: Submission experiment 1000 | 33.683 | 27.71 | 5.97 |
| @SubmissionPerformanceTests @Performance: Submission experimental_metadata 10 | 2.057 | 1.484 | 0.57 |
| @SubmissionPerformanceTests @Performance: Submission experimental_metadata 100 | 17.799 | 14.475 | 3.32 |
| @SubmissionPerformanceTests @Performance: Submission exposure 10 | 0.491 | 0.372 | 0.12 |
| @SubmissionPerformanceTests @Performance: Submission exposure 1000 | 35.309 | 27.426 | 7.88 |
| @SubmissionPerformanceTests @Performance: Submission family_history 10 | 0.566 | 0.353 | 0.21 |
| @SubmissionPerformanceTests @Performance: Submission family_history 100 | 3.881 | 3.353 | 0.53 |
| @SubmissionPerformanceTests @Performance: Submission family_history 1000 | 32.999 | 28.391 | 4.61 |
| @SubmissionPerformanceTests @Performance: Submission keyword 10 | 0.597 | 0.441 | 0.16 |
| @SubmissionPerformanceTests @Performance: Submission keyword 100 | 3.339 | 2.934 | 0.40 |
| @SubmissionPerformanceTests @Performance: Submission keyword 1000 | 29.205 | 25.911 | 3.29 |
| @SubmissionPerformanceTests @Performance: Submission publication 10 | 0.538 | 0.357 | 0.18 |
| @SubmissionPerformanceTests @Performance: Submission publication 100 | 3.278 | 3.527 | -0.25 |
| @SubmissionPerformanceTests @Performance: Submission publication 1000 | 30.137 | 26.143 | 3.99 |
| @SubmissionPerformanceTests @Performance: Submission read_group 10 | 0.49 | 0.449 | 0.04 |
| @SubmissionPerformanceTests @Performance: Submission read_group 100 | 3.313 | 2.969 | 0.34 |
| @SubmissionPerformanceTests @Performance: Submission read_group 1000 | 39.519 | 30.71 | 8.81 |
| @SubmissionPerformanceTests @Performance: Submission read_group_qc 10 | 0.698 | 0.62 | 0.08 |
| @SubmissionPerformanceTests @Performance: Submission read_group_qc 100 | 5.346 | 5.075 | 0.27 |
| @SubmissionPerformanceTests @Performance: Submission read_group_qc 1000 | 36.291 | 34.473 | 1.82 |
| @SubmissionPerformanceTests @Performance: Submission sample 10 | 0.586 | 0.462 | 0.12 |
| @SubmissionPerformanceTests @Performance: Submission sample 100 | 3.984 | 3.039 | 0.94 |
| @SubmissionPerformanceTests @Performance: Submission sample 1000 | 38.907 | 35.885 | 3.02 |
| @SubmissionPerformanceTests @Performance: Submission slide 10 | 0.672 | 0.362 | 0.31 |
| @SubmissionPerformanceTests @Performance: Submission slide 100 | 3.637 | 3.324 | 0.31 |
| @SubmissionPerformanceTests @Performance: Submission slide 1000 | 36.715 | 31.916 | 4.80 |
| @SubmissionPerformanceTests @Performance: Submission slide_count 10 | 0.617 | 0.36 | 0.26 |
| @SubmissionPerformanceTests @Performance: Submission slide_count 100 | 3.13 | 2.871 | 0.26 |
| @SubmissionPerformanceTests @Performance: Submission slide_count 1000 | 36.703 | 29.706 | 7.00 |
| @SubmissionPerformanceTests @Performance: Submission slide_image 10 | 1.965 | 1.486 | 0.48 |
| @SubmissionPerformanceTests @Performance: Submission slide_image 100 | 17.5 | 15.017 | 2.48 |
| @SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 10 | 2.085 | 1.586 | 0.50 |
| @SubmissionPerformanceTests @Performance: Submission submitted_aligned_reads 100 | 20.549 | 14.557 | 5.99 |
| @SubmissionPerformanceTests @Performance: Submission submitted_copy_number 10 | 2.148 | 1.626 | 0.52 |
| @SubmissionPerformanceTests @Performance: Submission submitted_copy_number 100 | 18.592 | 16.521 | 2.07 |
| @SubmissionPerformanceTests @Performance: Submission submitted_methylation 10 | 2.027 | 1.526 | 0.50 |
| @SubmissionPerformanceTests @Performance: Submission submitted_methylation 100 | 17.884 | 14.166 | 3.72 |
| @SubmissionPerformanceTests @Performance: Submission submitted_somatic_mutation 10 | 2.327 | 1.463 | 0.86 |
| @SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 10 | 2.181 | 1.513 | 0.67 |
| @SubmissionPerformanceTests @Performance: Submission submitted_unaligned_reads 100 | 18.897 | 14.343 | 4.55 |
| @SubmissionPerformanceTests @Performance: Submission treatment 10 | 0.487 | 0.401 | 0.09 |
| @SubmissionPerformanceTests @Performance: Submission treatment 100 | 3.387 | 2.91 | 0.48 |
| @SubmissionPerformanceTests @Performance: Submission treatment 1000 | 34.397 | 27.997 | 6.40 |
Bump flask to the latest version also bump pytest to 4.6.5 (latest version that supports python 2) and pytest-flask to 0.15.0 (latest version) to fix unit test issues
Dependency updates