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uchicago-bio / 2015-Autumn-Forum

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Only query against nr.14 succeeds? #41

Closed bjmc closed 9 years ago

bjmc commented 9 years ago

I'm having some problems with my array job. When I run it, it seems to correctly segment it up into separate jobs against the different databases, but all the jobs fail except the last one. I'm not exactly sure what the problem could be.

According to the BLAST manual the exit code 1 is for "Error in query sequence(s) or BLAST options" but I'm using the exact same query sequence and BLAST options in every job.

This is my output from $ sacct

17063813_14  blast-per+     sandyb  mpcs56420          1  COMPLETED      0:0 
17063813_14+      batch             mpcs56420          1  COMPLETED      0:0 
17063813_0   blast-per+     sandyb  mpcs56420          1     FAILED      1:0 
17063813_0.+      batch             mpcs56420          1     FAILED      1:0 
17063813_1   blast-per+     sandyb  mpcs56420          1     FAILED      1:0 
17063813_1.+      batch             mpcs56420          1     FAILED      1:0 
17063813_2   blast-per+     sandyb  mpcs56420          1     FAILED      1:0 
17063813_2.+      batch             mpcs56420          1     FAILED      1:0 
17063813_3   blast-per+     sandyb  mpcs56420          1     FAILED      1:0 
17063813_3.+      batch             mpcs56420          1     FAILED      1:0 
17063813_4   blast-per+     sandyb  mpcs56420          1     FAILED      1:0 
17063813_4.+      batch             mpcs56420          1     FAILED      1:0 
17063813_5   blast-per+     sandyb  mpcs56420          1     FAILED      1:0 
17063813_5.+      batch             mpcs56420          1     FAILED      1:0 
17063813_6   blast-per+     sandyb  mpcs56420          1     FAILED      1:0 
17063813_6.+      batch             mpcs56420          1     FAILED      1:0 
17063813_7   blast-per+     sandyb  mpcs56420          1     FAILED      1:0 
17063813_7.+      batch             mpcs56420          1     FAILED      1:0 
17063813_8   blast-per+     sandyb  mpcs56420          1     FAILED      1:0 
17063813_8.+      batch             mpcs56420          1     FAILED      1:0 
17063813_9   blast-per+     sandyb  mpcs56420          1     FAILED      1:0 
17063813_9.+      batch             mpcs56420          1     FAILED      1:0 
17063813_10  blast-per+     sandyb  mpcs56420          1     FAILED      1:0 
17063813_10+      batch             mpcs56420          1     FAILED      1:0 
17063813_11  blast-per+     sandyb  mpcs56420          1     FAILED      1:0 
17063813_11+      batch             mpcs56420          1     FAILED      1:0 
17063813_12  blast-per+     sandyb  mpcs56420          1     FAILED      1:0 
17063813_12+      batch             mpcs56420          1     FAILED      1:0 
17063813_13  blast-per+     sandyb  mpcs56420          1     FAILED      1:0 
17063813_13+      batch             mpcs56420          1     FAILED      1:0
bjmc commented 9 years ago

Ok, for some reason running on the /scratch partition it fails, but if the workdir is in my home directory, it's okay.