I am trying to make data for the vesicular membrane structure using the create_em2_system.em2 file, but I faced error regarding the ghost atoms.
I tried to solve the error and make data using the mentioned file, but when I run the simulation I face "Lost atoms: original 95016 current 94843 (../thermo.cpp:438)". I compared this data with the data file you put in the MesM-P/examples/Vesicle_NVT/ which works properly, but I could find the differences and therefore I could not tackle the problem.
I really do appreciate if you have any recommendation for me.
Hello Dr. Davtyan,
I am trying to make data for the vesicular membrane structure using the create_em2_system.em2 file, but I faced error regarding the ghost atoms. I tried to solve the error and make data using the mentioned file, but when I run the simulation I face "Lost atoms: original 95016 current 94843 (../thermo.cpp:438)". I compared this data with the data file you put in the MesM-P/examples/Vesicle_NVT/ which works properly, but I could find the differences and therefore I could not tackle the problem. I really do appreciate if you have any recommendation for me.
All the best Emad