I'm trying to familiarize myself with the EXTREME algorithm as I am a Bioinformatics graduate student & this is one of the algorithms we are focusing on for a research project. However, when I run the 'python ../src/fasta-dinucleotide-shuffle.py -f GM12878_NRSF_ChIP.fasta > GM12878_NRSF_ChIP_shuffled.fasta' command from the README my GM12878_NRSF_ChIP_shuffled.fasta file is empty. I am running the command within a Anaconda3 prompt using a Python 2.7 environment. Any help would be greatly appreciated & please let me know if you need more details to help
Hello,
I'm trying to familiarize myself with the EXTREME algorithm as I am a Bioinformatics graduate student & this is one of the algorithms we are focusing on for a research project. However, when I run the 'python ../src/fasta-dinucleotide-shuffle.py -f GM12878_NRSF_ChIP.fasta > GM12878_NRSF_ChIP_shuffled.fasta' command from the README my GM12878_NRSF_ChIP_shuffled.fasta file is empty. I am running the command within a Anaconda3 prompt using a Python 2.7 environment. Any help would be greatly appreciated & please let me know if you need more details to help