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uci-cbcl / NoduleNet

[MICCAI' 19] NoduleNet: Decoupled False Positive Reduction for Pulmonary Nodule Detection and Segmentation
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Help needed for preprocessing #14

Closed davidsonic closed 4 years ago

davidsonic commented 4 years ago

It seems that there're some problems running python cvrt_annos_to_npy.py.

image

Not sure what the error indicates. Although the progress bars finishes, there were no files generated for further processing (process.py).

berceanbogdan commented 4 years ago

@davidsonic did you figure it out?

LXYTSOS commented 4 years ago

did you fix it?

LXYTSOS commented 4 years ago

don't use try catch block and you will see the error, and you can solve this in half an hour. QTOOUR5VIT UV$A)PUNJVA4

Webber-MP commented 3 years ago

I encounter the same problem. Can you provide the solution how you solve it? Thank you!

DongChen06 commented 2 years ago

@LXYTSOS @Webber-MP any solutions for this problem?

RonDen commented 2 years ago

I encounter the same problem. Is there any solution? It sames almost 20% .xml files (example: 186/089.xml) are CXRreadingSession, and namespace is not nih, but 'www.nih.gov/idri' , so the xml element tree parse cannot find the right element in the namespace.

The CXRreadingSession miss many infomation in node characters. So I don't know how to fix this. It seems this problem came from the data annotations. Maybe, the XML file have been updated....