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uci-cbcl / UFold

MIT License
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DNA sequences #2

Open diegocastano123 opened 3 years ago

diegocastano123 commented 3 years ago

I have a fasta file with DNA sequences i.e (A, T, G, C) and when run Ufold doesnt work, why? My fasta file must be aligned?

sperfu commented 3 years ago

Hi there,

Since our model is designed for predicting RNA sequences whose nucleotides are A,U,C,G (instead of A,T,C,G), so you may need to change your sequence to that accordingly.

Thanks

diegocastano123 commented 3 years ago

Hi,

Please check the web server, because in spite of changing of T by U in my fasta sequences, Ufold doesn't want to work correctly. The results of my output are the same as my input.

Best,

sperfu commented 2 years ago

Hi,

We have updated our web server, that should be work fine right now. Please take a look.

Thanks,