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uci-cbcl / genomix

Parallel genome assembly using Hyracks
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Scaffolding options are now commandline options. #145

Closed jakebiesinger closed 10 years ago

jakebiesinger commented 10 years ago

If you want to override the defaults, you have to set the values explicitly like so:

-scaffold_removeOtherOutgoing true -scaffold_removeOtherIncoming true -scaffold_candidatesScoreWalk true -scaffold_delayPrune true -scaffold_earlyStop false -scaffold_expandCandidateBranchMaxDistance 20

Elmira88 commented 10 years ago

LGTM! :)