Generate simulated data

uci-cbcl / genomix

Parallel genome assembly using Hyracks

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Generate simulated data #18

Open Nan-Zhang opened 11 years ago

Nan-Zhang commented 11 years ago

[x] Maybe chr19 or 1/10th of it? 100x coverage
[ ] generate statistics for our pipleline

jakebiesinger commented 11 years ago

You'll find a bunch of test data under /ffs/test/cbcl/wbiesing/testdata/hg19* as well as a very small (1,000x2 100bp reads) in our source repo at genomix/genomix-driver/src/test/resources/data/sequence/pathmerge/hg19*.

I have yet to run the stats on these datasets.

jakebiesinger commented 11 years ago

@Nan-Zhang this is the issue I was talking about.