Modelling and Inference of MICrobiomes Project (MIMIC) is a Python package dedicated to simulate, model, and predict microbial communities interactions
This PR bring the VARsim and VARinfer classes to do VAR simulation and bayesian inference.
Additionally, added the jupyter notebook examples in the examples directory to showcase how to use these new methodologies.
I have done the following to make this PR ready for review:
[x] I have updated the requirements.txt file (if appropriate)
[x] I have re-based my branch on the latest master branch
[x] I have added necessary documentation (if appropriate)
[x] I have commented my code, particularly in hard-to-understand areas
For the reviewer, make sure this PR meets these criteria before merging:
[ ] New code has comments
[ ] New code has tests (if appropriate)
[ ] New code has documentation (if appropriate)
[ ] New code has been reviewed by at least one other person
Pull Request To-Do List
Changes/Comments
This PR bring the VARsim and VARinfer classes to do VAR simulation and bayesian inference. Additionally, added the jupyter notebook examples in the examples directory to showcase how to use these new methodologies.
I have done the following to make this PR ready for review:
requirements.txtfile (if appropriate)For the reviewer, make sure this PR meets these criteria before merging: