ucl-cssb / MIMIC

Modelling and Inference of MICrobiomes Project (MIMIC) is a Python package dedicated to simulate, model, and predict microbial communities interactions

MIT License

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Packaging updates #44

Closed Fontanapink closed 8 months ago

Fontanapink commented 8 months ago

Pull Request To-Do List

Description of the changes

re-structured the whole project, to be more akin of a python package
Moved docs and examples outside the package's directory
automated and fixed all documentation to reflect these changes
removed gMLV and BVAR directories
fixed all pathing issues

I have done the following to make this PR ready for review:

[x] I have updated the requirements.txt file (if appropriate)
[x] I have re-based my branch on the latest master branch
[x] I have added necessary documentation (if appropriate)
[x] I have commented my code, particularly in hard-to-understand areas

For the reviewer, make sure this PR meets these criteria before merging:

[ ] New code has comments
[ ] New code has tests (if appropriate)
[ ] New code has documentation (if appropriate)
[ ] New code has been reviewed by at least one other person