ucl-cssb / MIMIC

Modelling and Inference of MICrobiomes Project (MIMIC) is a Python package dedicated to simulate, model, and predict microbial communities interactions

MIT License

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Herold Example update using metabolic and abundance datasets #60

Closed Fontanapink closed 3 months ago

Fontanapink commented 3 months ago

Pull Request To-Do List

Description of the changes:

This PR brings mainly the use of metabolic and abundance datasets to use in combination with VAR inference using bayesian methods.

I have done the following to make this PR ready for review:

[x] I have re-based my branch on the latest master branch
[x] I have added necessary documentation (if appropriate)
[x] I have commented my code, particularly in hard-to-understand areas
[ ] I have assigned a reviewer to this PR

For the reviewer, make sure this PR meets these criteria before merging:

[ ] New code has comments
[ ] New code has tests (if appropriate)
[ ] New code has documentation (if appropriate)
[ ] New code has been reviewed by at least one other person