Modelling and Inference of MICrobiomes Project (MIMIC) is a Python package dedicated to simulate, model, and predict microbial communities interactions
Created infer_gLV_bayes class for bayesian inference including using Horseshoe priors for shrinkage, and considering perturbations assuming unknown interaction terms to increase identifiability. The example notebook examples-bases-gLV was updated to utilise the functions from this class
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Description of the changes:
Created infer_gLV_bayes class for bayesian inference including using Horseshoe priors for shrinkage, and considering perturbations assuming unknown interaction terms to increase identifiability. The example notebook examples-bases-gLV was updated to utilise the functions from this class
I have done the following to make this PR ready for review:
For the reviewer, make sure this PR meets these criteria before merging: