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ucl-cssb / MIMIC

Modelling and Inference of MICrobiomes Project (MIMIC) is a Python package dedicated to simulate, model, and predict microbial communities interactions
MIT License
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[Feature]: Installation instructions on MacOS X #79

Open cpbarnes opened 6 days ago

cpbarnes commented 6 days ago

Feature Title

Improved installation instructions

Is your feature request related to a problem?

Yes installation issues of the package

Describe the solution you'd like

These steps worked for me. I used conda, installing pymc first (according to those instructions): https://www.pymc.io/projects/docs/en/stable/installation.html

conda create -p ./env -c conda-forge "pymc>=5" conda activate ./env conda install seaborn scikit-learn scipy numpy ipykernel ipywidgets

git clone https://github.com/ucl-cssb/MIMIC.git cd MIMIC

/env/bin/python3.12 setup.py install ### Additional Context _No response_ ### Optional Labels - [X] HIGH priority - [ ] LOW priority - [ ] good first issue - [ ] help wanted - [ ] wontfix - [ ] question/discussion
ChaniaClare commented 1 day ago

I installed on Mac OS using PyCharm to check how versatile it is

To install required packages: Set a new virtual environment (set Python Interpreter as the Project) Search through available packages Select packages and versions to install