uclahs-cds / package-CancerEvolutionVisualization

Publication Quality Phylogenetic Tree Plots
https://cran.r-project.org/web/packages/CancerEvolutionVisualization/
GNU General Public License v2.0
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Update gene input #33

Closed dan-knight closed 2 years ago

dan-knight commented 2 years ago

These changes update the input format for gene data. The cn column has been changed to accept positive, negative and NA values instead of gain and loss strings. A boolean SNV column was added to allow genes to be differentiated with italicized text. The gene column was changed to a more generic name column.

Example Input Format

name node CNA SNV
GENE1 1 1 FALSE
GENE2 1 -1 FALSE
GENE3 2 NA TRUE
GENE4 1 -1 FALSE

Example Plot