[X] The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)-[brief_description_of_branch].
[X] I have set up or verified the branch protection rule following the github standards before opening this pull request.
[X] I have added the changes included in this pull request to NEWS under the next release version or unreleased, and updated the date.
[X] I have updated the version number in metadata.yaml and DESCRIPTION.
[X] Both R CMD build and R CMD check run successfully.
These changes simplify prep.tree for a more general use case. The function originally took larger data.frames as input (containing multiple samples) and created a subset based on a sample name. Now, the function assumes that any sampling has been done before it is passed to prep.tree.
[X] I have read the code review guidelines and the code review best practice on GitHub check-list.
[X] The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)-[brief_description_of_branch].
[X] I have set up or verified the branch protection rule following the github standards before opening this pull request.
[X] I have added the changes included in this pull request to
NEWSunder the next release version or unreleased, and updated the date.[X] I have updated the version number in
metadata.yamlandDESCRIPTION.[X] Both
R CMD buildandR CMD checkrun successfully.These changes simplify
prep.treefor a more general use case. The function originally took larger data.frames as input (containing multiple samples) and created a subset based on a sample name. Now, the function assumes that any sampling has been done before it is passed toprep.tree.