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uclahs-cds
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package-PipeVal
An easy to use CLI tool that can be used to validate different parameters in your NF script/pipeline.
GNU General Public License v2.0
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Kpash update pysam version
#101
kiarod
closed
1 month ago
0
`pysam` v0.22.1
#100
yashpatel6
closed
1 month ago
0
Compression MIME addition and checksum identification expanded
#99
yashpatel6
closed
3 months ago
0
add support for unmmapped bams
#98
zhuchcn
closed
3 months ago
2
Unmapped BAM
#97
zhuchcn
closed
3 months ago
0
Upgrade to latest static analysis Action
#96
nwiltsie
closed
5 months ago
0
Checksum flag
#95
yashpatel6
closed
7 months ago
0
Python version in README.md does not match setup.cfg
#94
j2salmingo
opened
9 months ago
0
Compression integrity checks
#93
yashpatel6
closed
10 months ago
0
FASTQ quickcheck
#92
yashpatel6
opened
10 months ago
0
Add formatter for style consistency
#91
yashpatel6
opened
10 months ago
0
Path argument validation in argparse
#90
yashpatel6
opened
10 months ago
0
FASTQ Validator
#89
yashpatel6
closed
10 months ago
7
Refactor interface
#88
yashpatel6
closed
10 months ago
0
Add locking for validation printing
#87
yashpatel6
opened
10 months ago
1
Parallelize validation
#86
yashpatel6
closed
10 months ago
0
Update CICD-base.yaml
#85
nwiltsie
closed
10 months ago
0
Autofix broken Confluence links
#84
nwiltsie
closed
10 months ago
0
Add diagram
#83
yashpatel6
closed
4 months ago
2
Additional checksum type support
#82
yashpatel6
opened
1 year ago
0
Resolve links
#81
yashpatel6
closed
1 year ago
1
Release `v4.0.0 rc.1`
#80
yashpatel6
closed
1 year ago
0
Compression checks and detection
#79
yashpatel6
closed
1 year ago
0
Update readme
#78
yashpatel6
closed
1 year ago
0
Add SAM and CRAM checks
#77
yashpatel6
closed
1 year ago
3
VCF quickcheck
#76
yashpatel6
opened
1 year ago
1
Add tests for main runner functions
#75
yashpatel6
closed
1 year ago
1
Add unit tests
#74
yashpatel6
closed
1 year ago
0
`python-magic` for file type detection and checks
#73
yashpatel6
closed
1 year ago
0
Automatic detection
#72
yashpatel6
closed
1 year ago
2
Add function to get chromosome naming convention
#71
madisonjordan
opened
1 year ago
1
Address additional README comments
#70
yashpatel6
closed
1 year ago
0
Update PR template
#69
madisonjordan
closed
1 year ago
1
Update PR template
#68
madisonjordan
opened
1 year ago
0
Update README
#67
madisonjordan
closed
1 year ago
0
Fix missing checksum module in dockerfile
#66
madisonjordan
closed
1 year ago
1
Missing checksum module in Dockerfile
#65
yashpatel6
closed
1 year ago
0
Update auto file-type detection
#64
madisonjordan
closed
1 year ago
3
Restructure repository
#63
yashpatel6
closed
1 year ago
2
Python 3.10
#62
yashpatel6
closed
1 year ago
0
Ubuntu 20.04 update Dockerfile fix
#61
yashpatel6
closed
1 year ago
2
Add bam index check
#60
aybeshlikyan
closed
1 year ago
1
Instructions for adding/updating as submodule
#59
madisonjordan
closed
1 year ago
3
Add auto-build workflow (pt. 2)
#57
aybeshlikyan
closed
1 year ago
0
Add auto-build workflow and repo source label
#56
aybeshlikyan
closed
1 year ago
6
Add repo source label
#55
aybeshlikyan
closed
1 year ago
0
Add auto-build workflow
#54
aybeshlikyan
closed
1 year ago
0
`gzip` file validation with `gzip -t`
#53
yashpatel6
closed
1 year ago
0
Make input type optional
#52
aybeshlikyan
closed
2 years ago
1
Set default for `validate -t`
#51
tyamaguchi-ucla
closed
2 years ago
0
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