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uclahs-cds / pipeline-align-DNA

Nextflow pipeline to align paired DNA FASTQs and sort, mark duplicates, and index resulting alignment
https://uclahs-cds.github.io/pipeline-align-DNA/
GNU General Public License v2.0
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Bump the pipeline-submodules group across 1 directory with 2 updates #327

Closed dependabot[bot] closed 5 months ago

dependabot[bot] commented 5 months ago

Bumps the pipeline-submodules group with 2 updates in the / directory: external/nextflow-modules and external/nextflow-config.

Updates external/nextflow-modules from ef40c10 to 537da32

Commits
  • 537da32 Merge pull request #44 from uclahs-cds/nwiltsie-pipeval-with-metadata
  • c462931 Support new pipeval entrypoint
  • 12bd361 Merge branch 'main' into nwiltsie-pipeval-with-metadata
  • c785ee5 Change PipeVal command because the interface was changed (#43)
  • 7498d12 Update CHANGELOG
  • c109ac8 Update README
  • 3bf48f4 Add run_validate_PipeVal_with_metadata method
  • See full diff in compare view


Updates external/nextflow-config from bc3f67e to a4e99e0

Commits
  • a4e99e0 Merge pull request #68 from uclahs-cds/yashpatel-generalize-type-name
  • 3b32ea9 Merge branch 'main' into yashpatel-generalize-type-name
  • 2127286 Merge pull request #69 from uclahs-cds/nwiltsie-allow-gstring-path
  • 964e0b9 Fix bug with warning message
  • d16e781 Allow Path schema type to be a GString
  • 49eb3e7 Add comma
  • 1a01640 Add generic type for readable file list
  • 07f0657 Update CHANGELOG
  • 467c92b Rename readable file list function to be more general
  • be1eaf5 Merge pull request #67 from uclahs-cds/yashpatel-allow-empty-csv-fields
  • Additional commits viewable in compare view


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nwiltsie commented 5 months ago

Beep boop, a script is posting on @nwiltsie's behalf.

The following NFTest cases completed successfully:

Summary log file: /hot/software/pipeline/pipeline-align-DNA/Nextflow/development/unreleased/dependabot/submodules/pipeline-submodules-50e4bfed89/log-nftest-20240624T175918Z.log