Our DNA metapipeline separate SNV, INDEL (and MNV for mutect2). So this allows us to input those files separately but group them together for germline and somatic separately.
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Description
Our DNA metapipeline separate SNV, INDEL (and MNV for mutect2). So this allows us to input those files separately but group them together for germline and somatic separately.
Closes #...
Checklist
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[X] The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)-[brief_description_of_branch].
[X] I have set up or verified the branch protection rule following the github standards before opening this pull request.
[X] I have added my name to the contributors listings in the
metadata.yamland themanifestblock in thenextflow.configas part of this pull request, am listed already, or do not wish to be listed. (This acknowledgement is optional.)[X] I have added the changes included in this pull request to the
CHANGELOG.mdunder the next release version or unreleased, and updated the date.[X] I have updated the version number in the
metadata.yamlandmanifestblock of thenextflow.configfile following semver, or the version number has already been updated. (Leave it unchecked if you are unsure about new version number and discuss it with the infrastructure team in this PR.)[X] All test cases have passed.