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uclahs-cds / pipeline-call-gSV

Nextflow pipeline to call germline structural variants and copy number variants using DELLY and Manta
https://uclahs-cds.github.io/pipeline-call-gSV/
GNU General Public License v2.0
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Add processes to node configs #126

Closed Faizal-Eeman closed 7 months ago

Faizal-Eeman commented 7 months ago 
          Has retry been tested with Manta? Just to confirm that Manta fails with proper exit codes for memory errors

Also, there are several processes missing from the allocations in the node configs, any reason for that?

Originally posted by @yashpatel6 in https://github.com/uclahs-cds/pipeline-call-gSV/issues/118#issuecomment-1971922288