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uclahs-cds / pipeline-call-gSV

Nextflow pipeline to call germline structural variants and copy number variants using DELLY and Manta
https://uclahs-cds.github.io/pipeline-call-gSV/
GNU General Public License v2.0
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Get appropriate test sample for NFtest #143

Closed Faizal-Eeman closed 5 months ago

Faizal-Eeman commented 6 months ago

https://github.com/uclahs-cds/group-nextflow-working-group/discussions/55#discussioncomment-8989802

Make sure test samples are not internal samples; they should be either the synthetic SMC-Het samples or the Illumina test samples

Neither SMC-Het or the Illumina test sample currently on the cluster work for DELLY CNV calling due to low coverage.

Find another Illumina test sample for NFtest.