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uclahs-cds / pipeline-call-gSV

Nextflow pipeline to call germline structural variants and copy number variants using DELLY and Manta
https://uclahs-cds.github.io/pipeline-call-gSV/
GNU General Public License v2.0
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Bump the pipeline-submodules group with 2 updates #159

Closed dependabot[bot] closed 3 months ago

dependabot[bot] commented 4 months ago

Bumps the pipeline-submodules group with 2 updates: external/pipeline-Nextflow-module and external/pipeline-Nextflow-config.

Updates external/pipeline-Nextflow-module from ef40c10 to 537da32

Commits
  • 537da32 Merge pull request #44 from uclahs-cds/nwiltsie-pipeval-with-metadata
  • c462931 Support new pipeval entrypoint
  • 12bd361 Merge branch 'main' into nwiltsie-pipeval-with-metadata
  • c785ee5 Change PipeVal command because the interface was changed (#43)
  • 7498d12 Update CHANGELOG
  • c109ac8 Update README
  • 3bf48f4 Add run_validate_PipeVal_with_metadata method
  • See full diff in compare view


Updates external/pipeline-Nextflow-config from bc3f67e to 2127286

Commits
  • 2127286 Merge pull request #69 from uclahs-cds/nwiltsie-allow-gstring-path
  • 964e0b9 Fix bug with warning message
  • d16e781 Allow Path schema type to be a GString
  • be1eaf5 Merge pull request #67 from uclahs-cds/yashpatel-allow-empty-csv-fields
  • 3b5f70f Merge branch 'main' into yashpatel-allow-empty-csv-fields
  • 9254f7a Update CHANGELOG
  • 4dd6882 Add optional input to allow for empty CSV field
  • See full diff in compare view


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nwiltsie commented 4 months ago

Beep boop, a script is posting on @nwiltsie's behalf.

The following NFTest cases completed successfully:

Summary log file: /hot/software/pipeline/pipeline-call-gSV/Nextflow/development/unreleased/dependabot/submodules/pipeline-submodules-897d4a3787/log-nftest-20240617T170800Z.log

dependabot[bot] commented 3 months ago

Superseded by #160.