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uclahs-cds / pipeline-call-sSNV

A Nextflow pipeline to identify the somatic single nucleotide variants (sSNVs) by comparing a pair of tumor/normal samples.
https://uclahs-cds.github.io/pipeline-call-sSNV/
GNU General Public License v2.0
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Add missing processes in SomaticSniper to resource configs #305

Open tyamaguchi-ucla opened 4 months ago

tyamaguchi-ucla commented 4 months ago 
          It looks like our configs miss a few processes in SomaticSniper (e.g. `generate_ReadCount_bam_readcount`) @sorelfitzgibbon

Missing processes may have issues with resource allocations when the processing node is busy.

Originally posted by @tyamaguchi-ucla in https://github.com/uclahs-cds/pipeline-call-sSNV/issues/288#issuecomment-2167133386