Closed nwiltsie closed 6 months ago
methods.check_limits is defined in a submodule, but it is shadowed by this local definition:
methods.check_limits
https://github.com/uclahs-cds/pipeline-call-sSV/blob/ef629df4f74ea8ca47cd0551c4b36c35d0eee8a3/config/methods.config#L81-L117
Per https://github.com/uclahs-cds/group-nextflow-working-group/discussions/53 we want to remove these local definitions in favor of the common versions:
https://github.com/uclahs-cds/pipeline-Nextflow-config/blob/da8e990e15f136f992a427ed629fe3a2bb78a1ea/config/methods/common_methods.config#L67-L105
methods.check_limitsis defined in a submodule, but it is shadowed by this local definition:https://github.com/uclahs-cds/pipeline-call-sSV/blob/ef629df4f74ea8ca47cd0551c4b36c35d0eee8a3/config/methods.config#L81-L117
Per https://github.com/uclahs-cds/group-nextflow-working-group/discussions/53 we want to remove these local definitions in favor of the common versions:
https://github.com/uclahs-cds/pipeline-Nextflow-config/blob/da8e990e15f136f992a427ed629fe3a2bb78a1ea/config/methods/common_methods.config#L67-L105