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uclahs-cds / pipeline-call-sSV

Nextflow pipeline to call somatic structural variants using DELLY and Manta
https://uclahs-cds.github.io/pipeline-call-sSV/
GNU General Public License v2.0
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DELLY Somatic CNV calling #144

Open Faizal-Eeman opened 5 months ago

Faizal-Eeman commented 5 months ago

@tyamaguchi-ucla @yashpatel6 DELLY also has somatic CNV calling. Any reason we opted not to add this before? If no, we can add this as well.

tyamaguchi-ucla commented 5 months ago

@tyamaguchi-ucla @yashpatel6 DELLY also has somatic CNV calling. Any reason we opted not to add this before? If no, we can add this as well.

@Faizal-Eeman Have they published any benchmarking result on the CNA calling?