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uclahs-cds / pipeline-call-sSV

Nextflow pipeline to call somatic structural variants using DELLY and Manta
https://uclahs-cds.github.io/pipeline-call-sSV/
GNU General Public License v2.0
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Bump external/pipeline-Nextflow-config from `e703579` to `bc3f67e` #159

Closed dependabot[bot] closed 5 months ago

dependabot[bot] commented 5 months ago

Bumps external/pipeline-Nextflow-config from e703579 to bc3f67e.

Commits
  • bc3f67e Merge pull request #64 from uclahs-cds/nwiltsie-process-afterscript
  • 1671182 Merge branch 'main' into nwiltsie-process-afterscript
  • 4c40847 Add ext.capture_logs to disable per-process
  • ef3fe9e Use a bash variable for readability
  • 6d1a3bd Handle edge case when no files match
  • 133c0be Add documentation
  • cb5618e Simplify variables
  • 42d7aa7 Try using multistring approach
  • 0f3fc31 Update CHANGELOG
  • 9d411a5 Add setup_process_afterscript method
  • See full diff in compare view


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Faizal-Eeman commented 5 months ago

@dependabot rebase

nwiltsie commented 5 months ago

Beep boop, a script is posting on @nwiltsie's behalf.

The following NFTest cases completed successfully:

Summary log file: /hot/software/pipeline/pipeline-call-sSV/Nextflow/development/unreleased/dependabot/submodules/external/pipeline-Nextflow-config-bc3f67e/log-nftest-20240531T195707Z.log