uclahs-cds / pipeline-call-sSV

Nextflow pipeline to call somatic structural variants using DELLY and Manta
https://uclahs-cds.github.io/pipeline-call-sSV/
GNU General Public License v2.0
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Update dependabot to group common submodules #164

Closed nwiltsie closed 4 months ago

nwiltsie commented 4 months ago

Description

This updates the dependabot configuration to group updates for pipeline-Nextflow-config and pipeline-Nextflow-module into a single PR. That should greatly reduce the testing burden to keep the submodules up-to-date.

See https://github.com/uclahs-cds/pipeline-recalibrate-BAM/pull/79 (and the resulting https://github.com/uclahs-cds/pipeline-recalibrate-BAM/pull/80) for an example of this configuration working.