Closed philsteinberg closed 1 year ago
Ran all of the TEST files from the script in R studio. Not sure why running the above command in VSCode does not work. I loaded R and submitted the example command. Do I need to load other modules or set up an environment to run Rscripts from the command line? I am not sure why module load argparse
does not work.
Error in library(argparse) : there is no package called ‘argparse’
mean number of subclones
Do you mean mode?
Ran all of the TEST files from the script in R studio. Not sure why running the above command in VSCode does not work. I loaded R and submitted the example command. Do I need to load other modules or set up an environment to run Rscripts from the command line? I am not sure why module load argparse does not work.
argparse
is probably not installed for R
on the cluster. Doing module load
doesn't load additional R packagaes unforatunately. You should be able to do install.packages('argparse')
in interactive R
on the cluster to install it.
Do you mean mode?
Yes, sorry, corrected.
argparse
is probably not installed forR
on the cluster. Doingmodule load
doesn't load additional R packagaes unforatunately. You should be able to doinstall.packages('argparse')
in interactiveR
on the cluster to install it.
Thanks, it works.
Description
Script for scatterplot comparing the number of subclones observed with the mode number of subclones observed across all 10 seeds.
Closes #99
Checklist
.png
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,.RData
,.xlsx
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, or other non-plain-text files. To automatically exclude such files using a .gitignore file, see here for example.main
branch protection rule following the github standards before opening this pull request.CHANGELOG.md
under the next release version or unreleased, and updated the date.Analysis Results
/hot/users/psteinberg/git/project-SRC-RandomSeed/src/output-analysis/plotting/subclone_relative_seed_variability.R
/hot/project/method/AlgorithmEvaluation/BNCH-000082-SRCRNDSeed/pipeline-call-src/plots/stripplot/2023-04-17_proj-seed_Strelka2-Battenberg-PyClone-VI_sr_relative_seed_var.pdf