Open lydiayliu opened 2 years ago
Sorry @ANeimanGolden I changed my mind. We want to have pipeline-call-SRC take the FACETS standard output from running call-sCNA. Since I didn't run FACETS using the call-sCNA pipeline, I don't have the correct input for this for the head and neck cohort (which will be used to run with different seeds). Could we switch the priority to Battenberg instead? https://github.com/uclahs-cds/project-AlgorithmEvaluation-BNCH-000082-SRCRNDSeed/issues/21 Sorry about this!!
Got it, I'll take a look.
More test data here /hot/user/amarkowitz/Rhabdomyoma/pipeline/call-sCNA/
FACETS
/hot/software/pipeline/pipeline-call-SRC/Nextflow/development/test_inputs/data/SARC0121_DMSO/facets/