I tried to extract snv and ccf from the PyClone-Vi ss output.
Output file:/hot/project/method/AlgorithmEvaluation/BNCH-000082-SRCRNDSeed/pipeline-call-src/run-strelka2-battenberg-pyclone-vi/output/<date>pyclone_ss_ccf_snv_per_subclones.tsv
[x] The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)]-[brief_description_of_branch].
[ ] I have added the major changes included in this pull request to the CHANGELOG.md under the next release version or unreleased, and updated the date.
[ ] I have filled in pipeline run and/or analysis resulting using the template provided above.
Description
Creating PR to discuss #45
I tried to extract snv and ccf from the PyClone-Vi ss output. Output file:
/hot/project/method/AlgorithmEvaluation/BNCH-000082-SRCRNDSeed/pipeline-call-src/run-strelka2-battenberg-pyclone-vi/output/<date>pyclone_ss_ccf_snv_per_subclones.tsvChecklist
[x] I have read the code review guidelines and the code review best practice on GitHub check-list.
[x] The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)]-[brief_description_of_branch].
[ ] I have added the major changes included in this pull request to the
CHANGELOG.mdunder the next release version or unreleased, and updated the date.[ ] I have filled in pipeline run and/or analysis resulting using the template provided above.