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uclahs-cds / project-method-AlgorithmEvaluation-BNCH-000082-SRCRNDSeed

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Launch SomaticSniper + Battenberg + DPClust [HNSC single-region] #58

Closed philsteinberg closed 1 year ago

philsteinberg commented 2 years ago

SomaticSniper input: /hot/project/disease/HeadNeckTumor/HNSC-000084-LNMEvolution/data/SNV/somaticsniper/recsnv/vcfs/ Battenberg input: /hot/project/disease/HeadNeckTumor/HNSC-000084-LNMEvolution/data/Battenberg/refit_dpnorm/

submission script (temporary): /hot/user/psteinberg/work-code/sr_somaticsniper_battenberg_dpclust_submission_script.sh

output: /hot/project/method/AlgorithmEvaluation/BNCH-000082-SRCRNDSeed/pipeline-call-src/run-somaticsniper-battenberg-dpclust/output/call-SRC-1.0.0-rc.1/

philsteinberg commented 1 year ago

Created new repo with pull request https://github.com/uclahs-cds/project-method-AlgorithmEvaluation-BNCH-000082-SRCRNDSeed-continued/pull/8. Somehow I cannot add @lydiayliu as a reviewer?

yashpatel6 commented 1 year ago

You'll need to update the settings on that repo to give access to Lydia; you'll probably want to have the settings look like the ones in this repo: https://github.com/uclahs-cds/project-method-AlgorithmEvaluation-BNCH-000082-SRCRNDSeed/settings/access

philsteinberg commented 1 year ago

@yashpatel6 Ah makes sense, solved. Thanks!

philsteinberg commented 1 year ago

completed