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ucsc-cgp / cgp-deployment

The UCSC Genomics Institute's Computational Genomics Platform (CGP). This repo contains the Docker compose-based deployment process.
https://ucsc-cgp.org
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`integration.sh` to test deployment of feature/commons still looking for `redwood` storage #77

Closed cricketsloan closed 5 years ago

cricketsloan commented 5 years ago

The test in feature/commons is broken. When running integration.sh from ~/cgp-deployment/test/, as suggested by the README to test the success of the deployment it exits with output

./cgp-deployment/test/integration.sh: line 18: ../redwood/cli/bin/redwood: No such file or directory

I think the reason is because that test relies on the existence of the Redwood storage system, which is not deployed in the current deployment.

I think the test needs to be redesigned, and test at the least the metadata TSV download functionality, and perhaps the export to FireCloud functionality.

┆Issue is synchronized with this JIRA Story ┆Project Name: CGP-Deployment ┆Issue Number: DEP-36