ucsc-mus-strain-cactus / build_browser

Build a UCSC brower from a progressiveCactus alignment
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contiguous uncompressed HAL hangs indefinitely #12

Open ifiddes opened 9 years ago

joelarmstrong commented 9 years ago

Hmm, it seems like the contiguous hal is much faster for lifting over large regions, but much, much slower for lifting over small regions. Not sure why. I can try playing with the chunk size, but I don't want to screw around with it too much for what might be a small improvement.