ucscXena / XenaGoWidget

Xena Gene Set Viewer (demo: http://xenademo.berkeleybop.io/xena)
https://xenageneset.berkeleybop.io/xena/
BSD 3-Clause "New" or "Revised" License
2 stars 5 forks source link

integrate with Xena spreadsheet #485

Closed nathandunn closed 4 years ago

nathandunn commented 4 years ago

The idea is that leveraging the spreadsheet existing capability to let user to create subgroups of samples, then send user-defined subgroups to your app to identify differential pathways

nathandunn commented 4 years ago

If a column has two binary states (any two states), we can create a drop-down (like a plot) that goes to the app and sends both samples out:

image

nathandunn commented 4 years ago

Sends two sample groups, shared cohort, some default analysis, and will automatically detect the geneset.

Default should probably be BPA expression (or maybe Paradigm)