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ucscXena / XenaGoWidget

Xena Gene Set Viewer (demo: http://xenademo.berkeleybop.io/xena)
https://xenageneset.berkeleybop.io/xena/
BSD 3-Clause "New" or "Revised" License
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correlate other data sets to go back into SS tool #567

Closed nathandunn closed 4 years ago

nathandunn commented 4 years ago

The idea would be to add the current activated view to the spreadsheet, including genesets and genes to allow users to further correlate.

We would have to add extra hubs, etc.

Potentially we could use sub-cohorts in some instances. These might be in the spreadsheet.

jingchunzhu commented 4 years ago

doc on linking back to specific view in Xena https://ucsc-xena.gitbook.io/project/technical-documentation/deep-linking-into-xena

nathandunn commented 4 years ago

One column is all of the genes and the rest is the gene sets:

https://xenabrowser.net/heatmap/?columns=%5B%7B%22name%22%3A%22tcga_Kallisto_tpm%22%2C%22host%22%3A%22https%3A%2F%2Ftoil.xenahubs.net%22%2C%22fields%22%3A%22TP53%20FOXM1%22%7D%5D

nathandunn commented 4 years ago

Columns can have different hubs

github-actions[bot] commented 4 years ago

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