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ucscXena
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xena-GDC-ETL
Extract, transform and load GDC data onto UCSC Xena
Apache License 2.0
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merge 2024 Development
#110
jingchunzhu
closed
2 weeks ago
0
Bump lxml from 4.2.0 to 4.9.1
#109
dependabot[bot]
opened
2 years ago
0
Bump numpy from 1.15.0 to 1.22.0
#108
dependabot[bot]
opened
2 years ago
0
Bump lxml from 4.2.0 to 4.6.5
#107
dependabot[bot]
closed
2 years ago
1
Bump lxml from 4.2.0 to 4.6.3
#106
dependabot[bot]
closed
2 years ago
1
Bump jinja2 from 2.10.1 to 2.11.3
#105
dependabot[bot]
opened
3 years ago
0
Bump lxml from 4.2.0 to 4.6.2
#104
dependabot[bot]
closed
3 years ago
1
Add MMRF-COMMPASS cohort
#103
maryjgoldman
opened
5 years ago
4
Improve GDCAPIPhenoset
#102
ayan-b
opened
5 years ago
1
Fix README rst table
#101
yunhailuo
closed
5 years ago
0
Fix links in README
#100
yunhailuo
closed
5 years ago
0
Fix PyPI release bug
#99
yunhailuo
closed
5 years ago
0
Revert "Add DLBCL, ORGANOID-PANCREATIC & MMRF-COMMPASS cohorts"
#98
yunhailuo
closed
5 years ago
1
Add DLBCL, ORGANOID-PANCREATIC & MMRF-COMMPASS cohorts
#97
ayan-b
closed
5 years ago
0
Update docs
#96
ayan-b
closed
5 years ago
1
Drop list fields from XML files
#95
ayan-b
closed
5 years ago
1
Add Pan-Can Phenotype Data
#94
ayan-b
closed
5 years ago
0
Add GISTIC and CNV Pan-can
#93
ayan-b
closed
5 years ago
0
Update illuminaMethyl probemaps
#92
ayan-b
closed
5 years ago
1
Add GDCAPIPhenoset
#91
ayan-b
closed
5 years ago
2
Reorder merge
#90
ayan-b
closed
5 years ago
0
Rename GDC_Description --> description
#89
ayan-b
closed
5 years ago
0
Add MMRF-COMMPASS Cohort
#88
maryjgoldman
closed
5 years ago
1
Add CGCI-BLGSP Cohort
#87
maryjgoldman
opened
5 years ago
0
Add ORGANOID-PANCREATIC Cohort
#86
maryjgoldman
closed
5 years ago
0
Drop samples having no genomic data
#85
ayan-b
closed
5 years ago
0
Shorten codes for list removal on GDC API phenotype data
#84
yunhailuo
opened
5 years ago
1
Fix non-concatenation axis non-aligned warning
#83
ayan-b
closed
5 years ago
5
Remove columns having `list` datatype
#82
ayan-b
closed
5 years ago
1
Separate out ETL for phenotype data of TCGA projects
#81
yunhailuo
opened
5 years ago
0
Remove usage of `cases` fields on `files` endpoint
#80
ayan-b
closed
5 years ago
2
Phenotype data missing for TCGA-14-1401-01A
#79
maryjgoldman
closed
5 years ago
3
Docs update
#78
ayan-b
closed
5 years ago
0
Change GISTIC name and add note to metadata json
#77
ayan-b
closed
5 years ago
0
Change name of GISTIC datasets
#76
maryjgoldman
closed
5 years ago
1
Add links to GDC pipelines to metadata
#75
maryjgoldman
closed
5 years ago
1
Add explanatory metadata to GISTIC cohorts
#74
maryjgoldman
closed
5 years ago
4
Add NCICCR-DLBCL Cohort
#73
ayan-b
closed
5 years ago
2
Add CTSP-DLBCL Cohort
#72
ayan-b
closed
5 years ago
2
Add HCMI Cohort
#71
ayan-b
opened
5 years ago
3
Add XLSX file format
#70
ayan-b
closed
5 years ago
9
Generate and load TARGET phenotype data
#69
maryjgoldman
closed
5 years ago
10
Remove phenotype data having no genomic data
#68
ayan-b
closed
5 years ago
4
Filter for blood derived samples in CNV data
#67
ayan-b
closed
5 years ago
1
Remove _EVENT and _TIME_TO_EVENT in the survival data files
#66
ayan-b
closed
5 years ago
1
template.gistic.meta.json: Add min and max
#65
ayan-b
closed
5 years ago
5
Remove disease_type.project from all phenotype files
#64
maryjgoldman
closed
5 years ago
10
Samples with phenotype data but no genomic data are still being included
#63
maryjgoldman
closed
5 years ago
5
Build GDC PanCancer cohort
#62
maryjgoldman
closed
5 years ago
0
Add min:-1 max:1 to GISTIC .json files
#61
maryjgoldman
closed
5 years ago
6
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