Add filter after annovar annotation to include those != synonymous

ucsd-ccbb / VAPr

VAPr: A Python package for NoSQL variant data storage, annotation and prioritization

MIT License

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Closed kmfisch closed 6 years ago

kmfisch commented 7 years ago

After annovar annotation, filter out synonymous variants and pass only the remaining variants to myvariant.info and into mongodb

AmandaBirmingham commented 6 years ago

It is realistic to expect that some users will in fact care about synonymous variants. Therefore, excluding them from the database is undesirable.