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ucsd-ccbb / VAPr

VAPr: A Python package for NoSQL variant data storage, annotation and prioritization
MIT License
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Optimize performance -- query myvariant.info for union of all sample variants #12

Closed kmfisch closed 6 years ago

kmfisch commented 7 years ago

Take the union of all samples and annotate these as one batch with myvariant.info to speed up query

AmandaBirmingham commented 6 years ago

All samples are now aggregated into a single vcf that is subsequently mined for variants to annotate: https://github.com/ucsd-ccbb/VAPr/blob/133d0ab51796d882d4de39152c8ca26535513a0c/VAPr/vapr_core.py#L248