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ucsd-ccbb / VAPr

VAPr: A Python package for NoSQL variant data storage, annotation and prioritization
MIT License
34 stars 3 forks source link

Add sample name to json for each document from filename, rather than embedded sample name in vcf #13

Open kmfisch opened 7 years ago

kmfisch commented 7 years ago

The sample name in each json document is extracted from the vcf. Change this to read the file name of the vcf file, since the sample name doesn't always get set correctly within the vcf.

kmfisch commented 7 years ago

Also write a project ID into document

AmandaBirmingham commented 6 years ago

Adam indicates this behavior should be corrected with the merge approach; @adammaikai , please confirm or deny :)