Create write csv function after myvariant.info annotation before loading into mongodb as intermediate output

ucsd-ccbb / VAPr

VAPr: A Python package for NoSQL variant data storage, annotation and prioritization

MIT License

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Create write csv function after myvariant.info annotation before loading into mongodb as intermediate output #14

Closed kmfisch closed 6 years ago

kmfisch commented 7 years ago

Create a function to write a csv sample for all annotated variants (annovar and myvariant.info) per sample and/or all samples (include this option) before loading into mongodb rather than after.

AmandaBirmingham commented 6 years ago

@kmfisch Why? I don't understand the use-case for this proposed change.

kmfisch commented 6 years ago

This issue is now deprecated. :)