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ucsd-ccbb / VAPr

VAPr: A Python package for NoSQL variant data storage, annotation and prioritization
MIT License
34 stars 3 forks source link

Fix CSV output format #9

Closed kmfisch closed 6 years ago

kmfisch commented 7 years ago
  1. Add project ID to csv output
  2. Reorder CSV output columns to reflect order of original vcf file (Sample ID, variant hgvs ID first then vcf info, then annovar annotation, then myvariant.info annotation)
  3. Read in correct design file and include this in output
AmandaBirmingham commented 6 years ago

CSV output has changed considerably, and Katie has signed off on new output format.