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ucsd-ccbb / qiimp

Web application to collect metadata specifications from an experimenter and produce metadata input files with appropriate constraints
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Mouse stool 'env_feature' should be mammalia-associated habitat #173

Open adswafford opened 5 years ago

stephanieorch commented 5 years ago

This is going to be a change in the animal xlsx file. This is why we gave it 3 options: animal, mammal, or livestock-associated habitat.

adswafford commented 5 years ago

I'm a little confused, shouldn't all the mouse templates have mammal instead? Or are you saying that those inherit from a mammalian shared package higher up?

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Adding @AmandaBirmingham for input too.

stephanieorch commented 5 years ago

yes env_feature is inherited from higher up (from the animal package)

adswafford commented 5 years ago

Gotcha, but it should be specified in the lower package here now for mouse so that mammalian is automatically selected instead of being inherited.

Austin D. Swafford, PhD Director of Research, Center for Microbiome Innovation Jacobs School of Engineering | UC San Diego O: 858-246-2906

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On Tue, Oct 16, 2018 at 8:47 AM stephanieorch notifications@github.com wrote:

yes env_feature is inherited from higher up (from the animal package)

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AmandaBirmingham commented 5 years ago

Do we want to add a mammal level in the hierarchy (below animal) so that you don't have to add mammal as the single choice for env_feature to all three of the mammals separately? Ideally we'd like to minimize duplication ...

adswafford commented 5 years ago

I like that plan!

On Tue, Oct 16, 2018, 10:31 AM Amanda Birmingham notifications@github.com wrote:

Do we want to add a mammal level in the hierarchy (below animal) so that you don't have to add mammal as the single choice for env_feature to all three of the mammals separately? Ideally we'd like to minimize duplication ...

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