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ucsd-ccbb / qiimp

Web application to collect metadata specifications from an experimenter and produce metadata input files with appropriate constraints
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Instruments for prep file support (if this is added) #183

Open adswafford opened 5 years ago

adswafford commented 5 years ago

Here are the complete lists (from EBI) of valid terms for "PLATFORM" and "INSTRUMENT_MODEL" in EBI. They need to be added to the tutorial:

Permitted values for platform LS454: 454 technology use 1-color sequential flows ILLUMINA: Illumina is 4-channel flowgram with 1-to-1 mapping between basecalls and flows PACBIO_SMRT: PacificBiosciences platform type for the single molecule real time (SMRT) technology. ION_TORRENT: Ion Torrent Personal Genome Machine (PGM) from Life Technologies. CAPILLARY: Sequencers based on capillary electrophoresis technology manufactured by LifeTech (formerly Applied BioSciences).

Permitted values for instrument 454 GS 454 GS 20 454 GS FLX 454 GS FLX+ 454 GS FLX Titanium 454 GS Junior HiSeq X Five HiSeq X Ten Illumina Genome Analyzer Illumina Genome Analyzer II Illumina Genome Analyzer IIx Illumina HiScanSQ Illumina HiSeq 1000 Illumina HiSeq 1500 Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 3000 Illumina HiSeq 4000 Illumina MiSeq Illumina MiniSeq Illumina NovaSeq 6000 NextSeq 500 NextSeq 550 PacBio RS PacBio RS II Sequel Ion Torrent PGM Ion Torrent Proton Ion Torrent S5 Ion Torrent S5 XL AB 3730xL Genetic Analyzer AB 3730 Genetic Analyzer AB 3500xL Genetic Analyzer AB 3500 Genetic Analyzer AB 3130xL Genetic Analyzer AB 3130 Genetic Analyzer AB 310 Genetic Analyzer unspecified