Closed GoogleCodeExporter closed 8 years ago
Original comment by benb...@gmail.com
on 11 Apr 2011 at 4:11
Original comment by benb...@gmail.com
on 11 Apr 2011 at 4:12
Since there us UI and geneus interface stuff, I want Tejas to assist, and lead
devel on this if possible. I can handle the backend pipeline part
Original comment by zack...@gmail.com
on 11 Apr 2011 at 11:21
We need to discuss this as a general topic though. I'm not sure the Geneus
implementation is realistic at this point. It might be easier and more
realistic just to have a daemon that does it all on the backend and
automatically puts results into ECCP database. Samples from the same library
are easily identifiable from the Geneus ID.
Original comment by benb...@gmail.com
on 11 Apr 2011 at 11:26
we should have everything we need to match samples using our existing
mysql://epifire2/sequencing db. It gets regenerated every night from geneus and
contains sample meta as well integrating derived qc results.
Original comment by zack...@gmail.com
on 11 Apr 2011 at 11:35
Original comment by zack...@gmail.com
on 6 Feb 2012 at 11:45
We increasingly need this for NOMe-seq and WGBS. We need to be able to merge
and automatically run pipeline up to and including Bis-SNP.
Original comment by benb...@gmail.com
on 31 Jul 2012 at 7:20
Original comment by benb...@gmail.com
on 31 Jul 2012 at 7:20
Original comment by zack...@gmail.com
on 31 Jul 2012 at 7:59
this is still an ongoing issue and is not forgotten
Original comment by zack...@gmail.com
on 8 Nov 2012 at 10:51
we have an automated pipeline for merging, we just need to kick it off with
geneus
Original comment by zack...@gmail.com
on 4 Dec 2012 at 10:20
this is pretty much done, added as part of the backend rewrite.
Original comment by zack...@gmail.com
on 28 Feb 2013 at 11:32
closing this general issue.
submit specific problems as a new ticket
Original comment by zack...@gmail.com
on 14 Mar 2013 at 11:28
Issue 432 has been merged into this issue.
Original comment by zack...@gmail.com
on 14 Mar 2013 at 11:29
Original issue reported on code.google.com by
benb...@gmail.com
on 11 Apr 2011 at 4:10